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Table 1 Classification and general features of APEC strain ACN001

From: Complete genome sequence and characterization of avian pathogenic Escherichia coli field isolate ACN001

MIGS ID

Property

Term

Evidence codea

 

Classification

Domain Bacteria

TAS [24]

  

Phylum Proteobacteria

TAS [25]

  

Class Gammaproteobacteria

TAS [26, 27]

  

Order ‘Enterobacteriales

TAS [26, 27]

  

Family Enterobacteriaceae

TAS [28]

  

Genus Escherichia

TAS [29, 30]

  

Species Escherichia coli

TAS [29, 30]

 

Gram stain

Negative

TAS [31]

 

Cell shape

Rod

TAS [31]

 

Motility

Motile

TAS [31]

 

Sporulation

None-sporeforming

TAS [31]

 

Temperature range

Mesophile

TAS [31]

 

Optimum temperature

37 °C

TAS [31]

 

pH range; Optimum

5.5–8.0; 7.0

TAS [31]

MIGS-6

Habitat

Host-associated

TAS [1, 32]

MIGS-6.3

Salinity range

Not reported

 

MIGS-22

Oxygen requirement

Aerobe and facultative anaerobe

TAS [31, 33]

 

Carbon source

Carbohdrates, salicin, sorbitol, mannitol, indole, peptides

TAS [34]

 

Energy metabolism

Chemo-organotrophic

TAS [33]

MIGS-15

Biotic relationship

Parasitism

TAS [1, 32]

MIGS-14

Pathogenicity

Pathogenic

TAS [1, 32]

MIGS-4

Geographic location

China

NAS

MIGS-5

Sample collection

2010

NAS

MIGS-4.1

Latitude

Not reported

 

MIGS-4.2

Longitude

Not reported

 

MIGS-4.3

Depth

Not reported

 

MIGS-4.4

Altitude

Not reported

 
  1. aEvidence codes - TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence); IDA: Inferred from Direct Assay. These evidence codes are from the Gene Ontology project [35]