Table 4 Number of genes associated with the 25 general COG functional categories
Code | Value | % of totala | Description |
|---|---|---|---|
J | 159 | 2.94 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 342 | 6.33 | Transcription |
L | 117 | 2.16 | Replication, recombination and repair |
B | 3 | 0.00 | Chromatin structure and dynamics |
D | 32 | 0.59 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.00 | Nuclear structure |
V | 55 | 1.01 | Defense mechanisms |
T | 216 | 4.00 | Signal transduction mechanisms |
M | 212 | 3.92 | Cell wall/membrane biogenesis |
N | 142 | 2.63 | Cell motility |
Z | 0 | 0.00 | Cytoskeleton |
W | 0 | 0.00 | Extracellular structures |
U | 55 | 1.01 | Intracellular trafficking and secretion |
O | 150 | 2.77 | Posttranslational modification, protein turnover, chaperones |
C | 244 | 4.52 | Energy production and conversion |
G | 190 | 3.52 | Carbohydrate transport and metabolism |
E | 434 | 8.04 | Amino acid transport and metabolism |
F | 78 | 1.44 | Nucleotide transport and metabolism |
H | 143 | 2.65 | Coenzyme transport and metabolism |
I | 185 | 3.42 | Lipid transport and metabolism |
P | 226 | 4.18 | Inorganic ion transport and metabolism |
Q | 67 | 1.24 | Secondary metabolites biosynthesis, transport and catabolism |
R | 364 | 6.74 | General function prediction only |
S | 372 | 6.89 | Function unknown |
- | 1,610 | 29.83 | Not in COGs |