Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 6,047,974 | 100.00 |
DNA coding (bp) | 5,284,158 | 87.00 |
DNA G + C (bp) | 3,772,331 | 62.00 |
DNA scaffolds | 524 | 100.00 |
Total genes | 5,509 | 100.00 |
Protein coding genes | 5,396 | 98.00 |
RNA genes | 59 | - |
Pseudo genes | 110 | 1.90 |
Genes in internal clusters | NA | - |
Genes with function prediction | 4,490 | 82.00 |
Genes assigned to COGs | 3,821 | 68.00 |
Genes with Pfam domains | 4,297 | 78.00 |
Genes with signal peptides | 5 | 0.09 |
Genes with transmembrane helices | 30 | 0.50 |
CRISPR repeats | 0 | - |