Table 3 Nucleotide content and gene count levels of the genome
Attribute | Value | % of total(a) |
|---|---|---|
Genome size (bp) | 2,588969 | 100 |
DNA coding (bp) | 2,209128 | 85.3 |
DNA G + C (bp) | 1,741869 | 67.3 |
DNA scaffolds | 59 | 100 |
Total genes | 2,388 | 100 |
Protein-coding genes | 2,307 | 96.6 |
RNA genes | 3 | 0.2 |
Pseudo genes | 30 | 1.2 |
Genes in internal clusters | Not reported | Not reported |
Genes with function prediction | 1190 | 49.8 |
Genes assigned to COGs | 1,325 | 55.5 |
Genes with Pfam domains | 1148 | 48.1 |
Genes with signal peptides | 247 | 10.3 |
Genes with transmembrane helices | 521 | 21.8 |
CRISPR repeats | Not reported | Not reported |