Table 4 Number of protein coding genes of Lysobacter dokdonensis DS-58 associated with the general COG functional categories
Code | Value | %agea | Description |
|---|---|---|---|
J | 168 | 5.32 | Translation, ribosomal structure and biogenesis |
A | 5 | 0.16 | RNA processing and modification |
K | 164 | 5.20 | Transcription |
L | 120 | 3.80 | Replication, recombination and repair |
B | 1 | 0.03 | Chromatin structure and dynamics |
D | 34 | 1.08 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.00 | Nuclear structure |
V | 60 | 1.90 | Defense mechanisms |
T | 232 | 7.35 | Signal transduction mechanisms |
M | 219 | 6.94 | Cell wall/membrane/envelope biogenesis |
N | 60 | 1.90 | Cell motility |
Z | 3 | 0.10 | Cytoskeleton |
W | 1 | 0.03 | Extracellular structures |
U | 96 | 3.04 | Intracellular trafficking, secretion, and vesicular transport |
O | 119 | 3.77 | Posttranslational modification, protein turnover, chaperones |
C | 142 | 4.50 | Energy production and conversion |
G | 90 | 2.85 | Carbohydrate transport and metabolism |
E | 184 | 5.83 | Amino acid transport and metabolism |
F | 57 | 1.81 | Nucleotide transport and metabolism |
H | 109 | 3.45 | Coenzyme transport and metabolism |
I | 114 | 3.61 | Lipid transport and metabolism |
P | 113 | 3.58 | Inorganic ion transport and metabolism |
Q | 55 | 1.74 | Secondary metabolites biosynthesis, transport and catabolism |
R | 308 | 9.76 | General function prediction only |
S | 303 | 9.60 | Function unknown |
- | 398 | 12.61 | Not in COGs |