Skip to main content

Table 2 Project information

From: Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

MIGS ID Property Term
MIGS 31 Finishing quality High-quality draft
MIGS-28 Libraries used Two paired-end libraries of 180 bp, 380 bp and two mate-pair libraries of 2,000 bp, 6,000 bp, respectively
MIGS 29 Sequencing platforms Illumina HiSeq 2000
MIGS 31.2 Fold coverage ~330× for GM4792 Lac+ and ~370× for GM4792 Lac- (180 bp); ~100x (other libraries)
MIGS 30 Assemblers ALLPATHS-LG Release 42411 [31]
MIGS 32 Gene calling method RATT, Prodigal v2.5 [35]
  Locus Tag U068 for Lac+ and U069 for Lac-
  Genbank ID CP011342 for Lac+ and CP011343 for Lac-
  GenBank Date of Release Jun 6, 2015
  GOLD ID Gi0059689 for GM4792 Lac+ and Gi0059688 for GM4792 Lac-
  BIOPROJECT PRJNA224130 for GM4792 Lac+ and PRJNA224131 for GM4792 Lac-
  SRA IDs GM4792 Lac+ : SRR2596368, SRR2537294,
SRR2619692, SRR2619693
GM4792 Lac- : SRR2529478, SRR1039666,
SRR2529494, SRR2533204
MIGS 13 Source Material Identifier GM4792
  Project relevance Experimental evolution, Tree of Life