Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 6,360,256 | 100.00 |
DNA coding (bp) | 5,588,126 | 87.86 |
DNA G + C (bp) | 3,945,558 | 62.03 |
DNA scaffolds | 1 | 100.00 |
Total genes | 5,556 | 100.00 |
Protein coding genes | 5,473 | 98.51 |
RNA genes | 83 | 1.49 |
Pseudo genes | 90 | 1.62 |
Genes in internal clusters | 5,473 | 98.51 |
Genes with function prediction | 4,886 | 87.94 |
Genes assigned to COGs | 4,092 | 73.65 |
Genes with Pfam domains | 4,748 | 85.46 |
Genes with signal peptides | 577 | 10.39 |
Genes with transmembrane helices | 1,228 | 22.10 |
CRISPR repeats | 0 | 0 |