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Table 4 Number of genes associated with general COG functional categories

From: Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum

Code Value % age Description
J 146 10.0 Translation, ribosomal structure and biogenesis
A 0 0.0 RNA processing and modification
K 81 5.6 Transcription
L 81 5.6 Replication, recombination and repair
B 0 0.0 Chromatin structure and dynamics
D 4 0.3 Cell cycle control, Cell division, chromosome partitioning
V 79 5.4 Defense mechanisms
T 19 1.3 Signal transduction mechanisms
M 35 2.4 Cell wall/membrane biogenesis
N 12 0.8 Cell motility
U 13 0.9 Intracellular trafficking and secretion
O 63 4.3 Posttranslational modification, protein turnover, chaperones
C 116 8.0 Energy production and conversion
G 121 8.3 Carbohydrate transport and metabolism
E 122 8.4 Amino acid transport and metabolism
F 48 3.3 Nucleotide transport and metabolism
H 69 4.7 Coenzyme transport and metabolism
I 24 1.6 Lipid transport and metabolism
P 79 5.4 Inorganic ion transport and metabolism
Q 6 0.4 Secondary metabolites biosynthesis, transport and catabolism
R 216 14.8 General function prediction only
S 55 3.8 Function unknown
436 30.0 Not in COGs
  1. The total is based on the total number of protein coding genes in the genome