Table 3 Genome statistics
Attribute | Number of genes | % of Total genesa |
|---|---|---|
Genome size (bp) | 1,611,988 | 100.00 |
DNA codingb (bp) | 1,270,203 | 78.8 |
DNA G+C (bp) | 772,789 | 47.9 |
DNA scaffolds | 1 | 100.00 |
Total genes | 1697 | 100.00 |
Protein coding genes | 1455 | 85.7 |
RNA genes | 50 | 3.0 |
Pseudo genes | 192 | 11.3 |
Genes in internal clusters | NDc | NDc |
Genes with function prediction | 1334 | 78.6 |
Genes assigned to COGs | 1389 | 81.9 |
Genes with Pfam domains | 1066 | 62.8 |
Genes with signal peptides | 343 | 20.2 |
Genes with transmembrane helices | 129 | 7.6 |
CRISPR repeats | 2 | – |