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Table 3 Genome statistics

From: Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants

Attribute

Value

% of total

Genome size (bp)

9,249,437

100

DNA coding (bp)

7,995,313

86.44

DNA G + C (bp)

5,925,688

64.07

DNA scaffolds

22

100

Total genes

8,065

100

Protein-coding genes

7,985

99.01

RNA genes

80

0.99

Pseudo genes

NA

-

Genes in internal clusters

3497

43.79

Genes with function prediction

3,237

40.53

Genes assigned to COGs

2,443

30.59

Genes with Pfam domains

6,088

76.24

Genes with signal peptides

1,979

24.78

Genes with transmembrane helices

1,515

18.97

CRISPR repeats

26

100

  1. The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome