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Fig. 1 | Standards in Genomic Sciences

Fig. 1

From: Complete genome sequence of Novosphingobium pentaromativorans US6-1T

Fig. 1

Phylogenetic tree highlighting the position of Novosphingobium pentaromativorans US6-1T (in bold) relative to the other validly published 28 type strains, and 4 non-type strains that have their whole genome sequences (indicated with *) within genus Novosphingobium. A total of 1305 unambiguously aligned sequences were compared and phylogenetic trees were reconstructed using the neighbor-joining [26], maximum-likelihood [27] and maximum-parsimony [28] methods. Bootstrap values (%) are based on 1000 replicates and are indicated at the nodes when they are higher than 50 % [29]. The evolutionary distances were calculated by the Jukes-Cantor method [30] using MEGA5 [31]. The nodes are marked with filled or open circles when the node was recovered by all three or by two treeing methods, respectively. Sphingosinicella microcystinivorans Y2T was used as an outgroup. Scale bar; 0.005 changes per nucleotide position

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