Table 4 Nucleotide content and gene count levels of the genome
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 3,607,052 | 100.00 |
DNA coding (bp) | 3,268,621 | 89.99 |
DNA G+C (bp) | 1,715,377 | 47.56 |
DNA scaffolds | 7 | 100.00 |
Total genes | 3427 | 100.00 |
Protein coding genes | 3296 | 96.18 |
RNA genes | 131 | 3.82 |
Pseudo genes | 24 | 0.70 |
Genes in internal clusters | 2431 | 70.94 |
Genes with function prediction | 2571 | 75.02 |
Genes assigned to COGs | 2797 | 81.62 |
Genes with Pfam domains | 2916 | 85.09 |
Genes with signal peptides | 273 | 7.97 |
Genes with transmembrane helices | 755 | 22.03 |
CRISPR repeats | 1 | – |