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Table 1 Classification and general features of Tolumonas lignolytica BRL6-1

From: Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

MIGS ID

Property

Term

Evidence codea

 

Classification

Domain Bacteria

TAS [45, 46]

  

Phylum Proteobacteria

TAS [47]

  

Class Gammaproteobacteria

TAS [48]

  

Order Aeromonadales

TAS [49]

  

Family Aeromonadaceae

TAS [50]

  

Genus Tolumonas

TAS [51]

  

Species Tolumonas lignolytica

 
  

Strain BRL6-1T

 
 

Gram stain

negative

IDA

 

Cell shape

rod

IDA

 

Motility

motile

IDA

 

Sporulation

non-sporulating

IDA

 

Temperature range

15–37 °C

IDA

 

Optimum temperature

30 °C

IDA

 

pH range; Optimum

4.5–8.5; 7

 
 

Carbon source

glucose, lactose, others (Table 6)

IDA

MIGS-6

Habitat

Tropical forest soil

TAS [52]

MIGS-6.3

Salinity

1 % NaCl

IDA

MIGS-22

Oxygen requirement

Facultative aerobe

IDA

MIGS-15

Biotic relationship

Free-living

IDA

MIGS-14

Pathogenicity

Non-pathogenic

NAS

MIGS-4

Geographic location

Soil collected from a subtropical lower montane wet forest in the Luquillo Experimental Forest, part of the NSF- sponsored Long-Term Ecological Research program in Puerto Rico

IDA

MIGS-5

Sample collection

July 2009

IDA

MIGS-4.1

Latitude

18.268 N

IDA

MIGS-4.2

Longitude

65.760 W

IDA

MIGS-4.4

Altitude

375 m

IDA

  1. aEvidence codes - IDA Inferred from Direct Assay, TAS, Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [53]