Table 3 Genome statistics
Attribute | Genome (total) | |
|---|---|---|
Value | % of totala | |
Size (bp) | 3,788,560 | 100.0 |
DNA coding (bp) | 3,353,298 | 88.5 |
G + C content (bp) | 2,249,198 | 59.36 |
DNA Scaffolds | 16 | |
Total genesb | 3,244 | 100.00 |
Protein-coding genes | 3,189 | 98.3 |
RNA genes | 55 | 1.7 |
Pseudo genes | 0 | 0.0 |
Genes in paralog clusters | 2535 | 78.4 |
Protein coding genes with function prediction | 2,564 | 79.0 |
Genes assigned to COGs | 2,023 | 62.3 |
Genes assigned Pfam domain | 2,605 | 80.3 |
Genes with signal peptides | 293 | 9.0 |
Genes with transmembrane helices | 766 | 23.7 |
CRISPR repeats | 15 | |