Table 3 Genome statistics
Attribute | Value | % of totala |
|---|---|---|
Genome size (bp) | 3,990,666 | 100.00 |
DNA coding (bp) | 2,927,153 | 73.35 |
DNA G + C (bp) | 3,368,220 | 84.40 |
DNA scaffolds | 414 | 100.00 |
Total genes | 3513 | 100.00 |
Protein-coding genes | 3418 | 97.30 |
RNA genes | 59 | 1.68 |
Pseudo genes | 36 | 1.02 |
Genes in internal clusters | 1435 | 40.85 |
Genes with function prediction | 2481 | 71.00 |
Genes assigned to COGs | 1450 | 41.28 |
Genes with Pfam domains | 2231 | 63.51 |
Genes with signal peptides | 253 | 7.20 |
Genes with transmembrane helices | 764 | 21.75 |
CRISPR repeats | 0 | - |