TY - JOUR AU - Shi, Z. AU - Luo, G. AU - Wang, G. PY - 2012 DA - 2012// TI - Cellulomonas carbonis sp. nov., isolated from coal mine soil [J] JO - Int J Syst Evol Microbiol VL - 62 UR - https://doi.org/10.1099/ijs.0.034934-0 DO - 10.1099/ijs.0.034934-0 ID - Shi2012 ER - TY - CHAP AU - Imhoff, J. F. ED - Brenner, D. J. ED - Krieg, N. R. ED - Staley, J. T. ED - Garrity, G. M. PY - 2005 DA - 2005// TI - Genus I. Rhodobacter BT - Bergey’s Manual of Systematic Bacteriology, second edition. vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria) PB - Springer CY - New York ID - Imhoff2005 ER - TY - JOUR AU - Funke, G. AU - Ramos, C. P. AU - Collins, M. D. PY - 1995 DA - 1995// TI - Identification of some clinical strains of CDC coryneform group A-3 and A-4 bacteria as Cellulomonas species and proposal of Cellulomonas hominis sp. nov. for some group A-3 strains JO - J Clin Microbiol VL - 33 ID - Funke1995 ER - TY - JOUR AU - Elberson, M. A. AU - Malekzadeh, F. AU - Yazdi, M. T. AU - Kameranpour, N. AU - Noori-Daloii, M. R. AU - Matte, M. H. PY - 2000 DA - 2000// TI - Cellulomonas persica sp. nov. and Cellulomonas iranensis sp. nov., mesophilic cellulose-degrading bacteria isolated from forest soils JO - Int J Syst Evol Microbiol. VL - 50 Pt 3 UR - https://doi.org/10.1099/00207713-50-3-993 DO - 10.1099/00207713-50-3-993 ID - Elberson2000 ER - TY - JOUR AU - Kuhad, R. C. AU - Gupta, R. AU - Singh, A. PY - 2011 DA - 2011// TI - Microbial cellulases and their industrial applications JO - Enzyme Res. VL - 2011 UR - https://doi.org/10.4061/2011/280696 DO - 10.4061/2011/280696 ID - Kuhad2011 ER - TY - JOUR AU - Kaur, A. AU - Mahajan, R. AU - Singh, A. AU - Garg, G. AU - Sharma, J. PY - 2010 DA - 2010// TI - Application of cellulase-free xylano-pectinolytic enzymes from the same bacterial isolate in biobleaching of kraft pulp JO - Bioresour Technol VL - 101 UR - https://doi.org/10.1016/j.biortech.2010.07.020 DO - 10.1016/j.biortech.2010.07.020 ID - Kaur2010 ER - TY - JOUR AU - Han, W. AU - He, M. PY - 2010 DA - 2010// TI - The application of exogenous cellulase to improve soil fertility and plant growth due to acceleration of straw decomposition JO - Bioresour Technol VL - 101 UR - https://doi.org/10.1016/j.biortech.2009.12.104 DO - 10.1016/j.biortech.2009.12.104 ID - Han2010 ER - TY - JOUR AU - Saratale, G. D. AU - Saratale, R. G. AU - Lo, Y. C. AU - Chang, J. S. PY - 2010 DA - 2010// TI - Multicomponent cellulase production by Cellulomonas biazotea NCIM-2550 and its applications for cellulosic biohydrogen production JO - Biotechnol Prog VL - 26 ID - Saratale2010 ER - TY - JOUR AU - Wildberger, P. AU - Brecker, L. AU - Nidetzky, B. PY - 2012 DA - 2012// TI - Examining the role of phosphate in glycosyl transfer reactions of Cellulomonas uda cellobiose phosphorylase using D-glucal as donor substrate JO - Carbohydr Res. VL - 356 UR - https://doi.org/10.1016/j.carres.2012.04.003 DO - 10.1016/j.carres.2012.04.003 ID - Wildberger2012 ER - TY - JOUR AU - Mayorga-Reyes, L. AU - Morales, Y. AU - Salgado, L. M. AU - Ortega, A. AU - Ponce-Noyola, T. PY - 2002 DA - 2002// TI - Cellulomonas flavigena: characterization of an endo-1,4-xylanase tightly induced by sugarcane bagasse JO - FEMS Microbiol Lett VL - 214 UR - https://doi.org/10.1111/j.1574-6968.2002.tb11348.x DO - 10.1111/j.1574-6968.2002.tb11348.x ID - Mayorga-Reyes2002 ER - TY - JOUR AU - Santiago-Hernández, A. AU - Vega-Estrada, J. AU - Carmen, M. -. H. M. AU - Hidalgo-Lara, M. E. PY - 2007 DA - 2007// TI - Purification and characterization of two sugarcane bagasse-absorbable thermophilic xylanases from the mesophilic Cellulomonas flavigena JO - J Ind Microbiol Biotechnol VL - 34 UR - https://doi.org/10.1007/s10295-006-0202-4 DO - 10.1007/s10295-006-0202-4 ID - Santiago-Hernández2007 ER - TY - JOUR AU - Gutiérrez-Nava, A. AU - Herrera-Herrera, A. AU - Mayorga-Reyes, L. AU - Salgado, L. M. AU - Ponce-Noyola, T. PY - 2003 DA - 2003// TI - Expression and characterization of the celcflB gene from Cellulomonas flavigena encoding an Endo-1,4-Glucanase JO - Curr Microbiol VL - 47 UR - https://doi.org/10.1007/s00284-002-4016-y DO - 10.1007/s00284-002-4016-y ID - Gutiérrez-Nava2003 ER - TY - JOUR AU - Abt, B. AU - Foster, B. AU - Lapidus, A. PY - 2010 DA - 2010// TI - Complete genome sequence of Cellulomonas flavigena type strain (134 T)[J] JO - Stand Genomic Sci VL - 3 UR - https://doi.org/10.4056/sigs.1012662 DO - 10.4056/sigs.1012662 ID - Abt2010 ER - TY - JOUR AU - Christopherson, M. R. AU - Suen, G. AU - Bramhacharya, S. AU - Jewell, K. A. AU - Aylward, F. O. AU - Mead, D. PY - 2013 DA - 2013// TI - The genome sequences of Cellulomonas fimi and “Cellvibrio gilvus” reveal the cellulolytic strategies of two facultative anaerobes, transfer of “Cellvibrio gilvus” to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov[J] JO - PloS one VL - 8 UR - https://doi.org/10.1371/journal.pone.0053954 DO - 10.1371/journal.pone.0053954 ID - Christopherson2013 ER - TY - JOUR AU - Jones, B. E. AU - Grant, W. D. AU - Duckworth, A. W. PY - 2005 DA - 2005// TI - Cellulomonas bogoriensis sp. nov., an alkaliphilic cellulomonad [J] JO - Int J Syst Evol Microbiol VL - 55 UR - https://doi.org/10.1099/ijs.0.63646-0 DO - 10.1099/ijs.0.63646-0 ID - Jones2005 ER - TY - JOUR AU - Li, L. AU - Stoeckert, C. J. AU - Roos, D. S. PY - 2003 DA - 2003// TI - OrthoMCL: identification of ortholog groups for eukaryotic genomes JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1224503 DO - 10.1101/gr.1224503 ID - Li2003 ER - TY - BOOK AU - Fischer, S. AU - Brunk, B. P. PY - 2002 DA - 2002// TI - Chen F, Gao X PB - Sons, Inc. CY - Harb OS ID - Fischer2002 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. PY - 2011 DA - 2011// TI - MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - JOUR AU - Overbeek, R. AU - Olson, R. AU - Pusch, G. D. AU - Olsen, G. J. AU - Davis, J. J. AU - Disz, T. PY - 2014 DA - 2014// TI - The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1226 DO - 10.1093/nar/gkt1226 ID - Overbeek2014 ER - TY - STD TI - Illumina [http://www.illumina.com.cn/] UR - http://www.illumina.com.cn/ ID - ref20 ER - TY - STD TI - SOAPdenovo v1.05 [http://soap.genomics.org.cn/] UR - http://soap.genomics.org.cn/ ID - ref21 ER - TY - JOUR AU - Darling, A. C. AU - Mau, B. AU - Blattner, F. R. AU - Perna, N. T. PY - 2004 DA - 2004// TI - Mauve: multiple alignment of conserved genomic sequence with rearrangements JO - Genome Res. VL - 14 UR - https://doi.org/10.1101/gr.2289704 DO - 10.1101/gr.2289704 ID - Darling2004 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet. VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Finn, R. D. AU - Bateman, A. AU - Clements, J. AU - Coggill, P. AU - Eberhardt, R. Y. AU - Eddy, S. R. PY - 2014 DA - 2014// TI - The Pfam protein families database JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1223 DO - 10.1093/nar/gkt1223 ID - Finn2014 ER - TY - JOUR AU - Moriya, Y. AU - Itoh, M. AU - Okuda, S. AU - Yoshizawa, A. AU - Kanehisa, M. PY - 2007 DA - 2007// TI - KAAS: an automatic genome annotation and pathway reconstruction server JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm321 DO - 10.1093/nar/gkm321 ID - Moriya2007 ER - TY - JOUR AU - Marchler-Bauer, A. AU - Lu, S. AU - Anderson, J. B. AU - Chitsaz, F. AU - Derbyshire, M. K. AU - DeWeese-Scott, C. PY - 2011 DA - 2011// TI - CDD: a Conserved Domain Database for the functional annotation of proteins JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1189 DO - 10.1093/nar/gkq1189 ID - Marchler-Bauer2011 ER - TY - JOUR AU - Wu, S. AU - Zhu, Z. W. AU - Fu, L. AU - Li, W. PY - 2011 DA - 2011// TI - WebMGA: a customizable web server for fast metagenomic sequence analysis JO - BMC Genomics. VL - 12 UR - https://doi.org/10.1186/1471-2164-12-444 DO - 10.1186/1471-2164-12-444 ID - Wu2011 ER - TY - JOUR AU - Krogh, A. AU - Larsson, B. È. AU - Heijne, G. AU - Sonnhammer, E. L. PY - 2001 DA - 2001// TI - Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes JO - J Mol Biol VL - 305 UR - https://doi.org/10.1006/jmbi.2000.4315 DO - 10.1006/jmbi.2000.4315 ID - Krogh2001 ER - TY - JOUR AU - Dyrlov Bendtsen, J. AU - Nielsen, H. AU - Heijne, G. PY - 2004 DA - 2004// TI - Improved prediction of signal peptides: SignalP 3.0 JO - J Mol Biol VL - 340 UR - https://doi.org/10.1016/j.jmb.2004.05.028 DO - 10.1016/j.jmb.2004.05.028 ID - Dyrlov Bendtsen2004 ER - TY - JOUR AU - Lombard, V. AU - Golaconda Ramulu, H. AU - Drula, E. AU - Coutinho, P. M. AU - Henrissat, B. PY - 2014 DA - 2014// TI - The Carbohydrate-active enzymes database (CAZy) in 2013 JO - Nucleic Acids Res. VL - 42 UR - https://doi.org/10.1093/nar/gkt1178 DO - 10.1093/nar/gkt1178 ID - Lombard2014 ER - TY - JOUR AU - Sangrila, S. AU - Tushar, K. M. PY - 2013 DA - 2013// TI - Cellulase production by bacteria: a review JO - British Microbiology Research Journal VL - 3 UR - https://doi.org/10.9734/BMRJ/2013/2367 DO - 10.9734/BMRJ/2013/2367 ID - Sangrila2013 ER - TY - JOUR AU - Teather, R. M. AU - Wood, P. J. PY - 1982 DA - 1982// TI - Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen JO - Appl Environ Microbiol. VL - 43 ID - Teather1982 ER - TY - JOUR AU - Woese, C. R. AU - Kandler, O. AU - Weelis, M. L. PY - 1990 DA - 1990// TI - Towards a natural system of organisms. Proposal for the domains Archaea, Bacteria and Eucarya JO - Proc Natl Acad Sci USA VL - 87 UR - https://doi.org/10.1073/pnas.87.12.4576 DO - 10.1073/pnas.87.12.4576 ID - Woese1990 ER - TY - JOUR AU - Ventura, M. AU - Canchaya, C. AU - Tauch, A. AU - Chandra, G. AU - Fitzgerald, G. F. AU - Chater, K. F. PY - 2007 DA - 2007// TI - Genomics of Actinobacteria: Tracing the Evolutionary History of an 173 Ancient Phylum JO - Microbiol Mol Biol R. VL - 71 UR - https://doi.org/10.1128/MMBR.00005-07 DO - 10.1128/MMBR.00005-07 ID - Ventura2007 ER - TY - JOUR AU - Stackebrandt, E. AU - Rainey, F. A. AU - Ward-Rainey, N. L. PY - 1997 DA - 1997// TI - Proposal for a new hierarchic classification system, Actinobacteria classis nov JO - Int. J. Syst. Bacteriol. VL - 47 UR - https://doi.org/10.1099/00207713-47-2-479 DO - 10.1099/00207713-47-2-479 ID - Stackebrandt1997 ER - TY - JOUR AU - Zhi, X. Y. AU - Li, W. J. AU - Stackebrandt, E. PY - 2009 DA - 2009// TI - An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa JO - Int. J. Syst. Evol. Microbiol. VL - 59 UR - https://doi.org/10.1099/ijs.0.65780-0 DO - 10.1099/ijs.0.65780-0 ID - Zhi2009 ER - TY - BOOK AU - Stackebrandt, E. AU - Schumann, P. AU - Prauser, H. PY - 2006 DA - 2006// TI - The family Cellulomonadaceae. The prokaryotes PB - Springer CY - New York UR - https://doi.org/10.1007/0-387-30743-5_40 DO - 10.1007/0-387-30743-5_40 ID - Stackebrandt2006 ER - TY - JOUR AU - Stackebrandt, E. AU - Seiler, H. AU - Schleifer, K. H. PY - 1982 DA - 1982// TI - Union of the genera Cellulomonas Bergey et al. and Oerskovia Prauser et al. in a redefined genus Cellulomonas JO - Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. 1 Orig. VL - C3 ID - Stackebrandt1982 ER - TY - JOUR AU - Grant, J. R. AU - Arantes, A. S. AU - Stothard, P. PY - 2012 DA - 2012// TI - Comparing thousands of circular genomes using the CGView Comparison Tool JO - BMC Genomics. VL - 13 UR - https://doi.org/10.1186/1471-2164-13-202 DO - 10.1186/1471-2164-13-202 ID - Grant2012 ER -