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Table 4 Number of genes associated with the 25 general COG functional categories

From: Complete genome sequence of Paracoccus marcusii phage vB_PmaS-R3 isolated from the South China Sea

Code

Value

% of totala

Description

J

0

0

Translation, ribosomal structure and biogenesis

A

0

0

RNA processing and modification

K

1

1.92

Transcription

L

3

5.77

Replication, recombination and repair

B

0

0

Chromatin structure and dynamics

D

0

0

Cell cycle control, Cell division, chromosome partitioning

V

0

0

Defense mechanisms

T

0

0

Signal transduction mechanisms

M

0

0

Cell wall/membrane biogenesis

N

0

0

Cell motility

U

0

0

Intracellular trafficking and secretion

O

0

0

Posttranslational modification, protein turnover, chaperones

C

0

0

Energy production and conversion

G

0

0

Carbohydrate transport and metabolism

E

0

0

Amino acid transport and metabolism

F

0

0

Nucleotide transport and metabolism

H

0

0

Coenzyme transport and metabolism

I

0

0

Lipid transport and metabolism

P

0

0

Inorganic ion transport and metabolism

Q

0

0

Secondary metabolites biosynthesis, transport and catabolism

R

0

0

General function prediction only

S

2

3.85

Function unknown

-

46

88.46

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome