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Table 4 Number of genes associated with general COG functional categories

From: Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna

Code

Value

% age

Description

J

149

7.17

Translation, ribosomal structure and biogenesis

A

0

0.00

RNA processing and modification

K

129

6.20

Transcription

L

102

4.91

Replication, recombination and repair

B

1

0.04

Chromatin structure and dynamics

D

20

0.96

Cell cycle control, Cell division, chromosome partitioning

V

35

1.68

Defense mechanisms

T

69

3.32

Signal transduction mechanisms

M

185

8.90

Cell wall/membrane biogenesis

N

4

0.19

Cell motility

U

27

1.30

Intracellular trafficking and secretion

O

76

3.66

Posttranslational modification, protein turnover, chaperones

C

123

5.92

Energy production and conversion

G

173

8.32

Carbohydrate transport and metabolism

E

154

7.41

Amino acid transport and metabolism

F

64

3.08

Nucleotide transport and metabolism

H

117

5.63

Coenzyme transport and metabolism

I

77

3.70

Lipid transport and metabolism

P

119

7.72

Inorganic ion transport and metabolism

Q

36

1.73

Secondary metabolites biosynthesis, transport and catabolism

R

255

12.27

General function prediction only

S

164

7.89

Function unknown

-

1442

43.02

Not in COGs

  1. The total is based on the total number of protein coding genes in the genome