Table 3 Nucleotide content and gene count levels of the genome
From: Genome sequence and description of Pantoea septica strain FF5
Attribute | Value | % of totala |
|---|---|---|
Genome size (bp) | 4,548,444 | |
DNA coding (bp) | 3,981,573 | 87.54 |
DNA G + C (bp) | 2,687,917 | 59.1 |
DNA scaffolds | 4 | - |
Total genes | 4,193 | 100.00 |
Protein-coding genes | 4,125 | 98.37 |
RNA genes | 68 | 1.50 |
Pseudo genes | 22 | 0.53 |
Genes in internal clusters | N/Db | - |
Genes with function prediction | 3,040 | 72.50 |
Genes assigned to COGs | 3,562 | 84.97 |
Genes with Pfam domains | 134 | 3.24 |
Genes with peptide signals | 214 | 5.18 |
Genes with transmembrane helices | 1,026 | 24.87 |
ORFan genes | 532 | 12.89 |
CRISPR repeats | 3 |