Table 4 Nucleotide content and gene count levels of the genome
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 3,675,175 | 100 |
DNA coding (bp) | 3,125,691 | 85.05 |
DNA G + C (bp) | 1,438,948 | 39.15 |
DNA scaffolds | 3,675,175 | 100 |
Total genes | 3823 | 100 |
Protein coding genes | 3666 | 85.05 |
RNA genes | 157 | 4.11 |
Pseudo genes | 269 | 7 |
Genes in internal clusters | 1751 | 45.8 |
Genes with function prediction | 2775 | 72.59 |
Genes assigned to COGs | 3595 | 98.06 |
Genes with Pfam domains | 183 | 4.79 |
Genes with signal peptides | 229 | 5.99 |
Genes with transmembrane helices | 1074 | 28.09 |
CRISPR repeats | 0 | 0 |