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Table 3 Genome statistics

From: Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

Attribute

Value

% of Total

Genome size (bp)

3,746,647

100.00

DNA scaffolds

3

100.00

DNA G + C (bp)

2,428,970

64.83

DNA coding (bp)

3,274,863

87.41

Total genes

3679

100.00

Protein coding genes

3558

96.71

RNA genes

121

3.29

Pseudo genes

50

1.36

Genes in internal clusters

Not determined

Not determined

Genes with function prediction

2736

74.37

Genes assigned to COGs

2328

63.28

Genes with Pfam domains

1976

69.33

Genes with signal peptides

314

8.53

Genes with transmembrane helices

900

24.46

CRISPR repeats

3

100.00