Table 4 Nucleotide content and gene count levels of the genome
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 4,385,518 | 100.00 |
DNA coding (bp) | 3,954,282 | 90.17 |
DNA G + C (bp) | 2,876,511 | 65.59 |
DNA scaffolds | 1 | 100.00 |
Total genes | 4,194 | 100.00 |
Protein coding genes | 4,146 | 98.86 |
Pseudo genes | 2 | 0.05 |
RNA genes | 48 | 1.14 |
Genes in internal clusters | NA | NA |
Genes with function prediction | 2,885 | 68.79 |
Genes assigned to COGs | 2,892 | 69.74 |
Genes with Pfam domains | 3,347 | 79.80 |
Genes with signal peptides | 233 | 5.56 |
Genes coding transmembrane helices | 810 | 19.31 |
CRISPR repeats | 4 | 0.10 |