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Table 4 Nucleotide content and gene count levels of the genome

From: Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family

Attribute Value % of total
Genome size (bp) 4,385,518 100.00
DNA coding (bp) 3,954,282 90.17
DNA G + C (bp) 2,876,511 65.59
DNA scaffolds 1 100.00
Total genes 4,194 100.00
Protein coding genes 4,146 98.86
Pseudo genes 2 0.05
RNA genes 48 1.14
Genes in internal clusters NA NA
Genes with function prediction 2,885 68.79
Genes assigned to COGs 2,892 69.74
Genes with Pfam domains 3,347 79.80
Genes with signal peptides 233 5.56
Genes coding transmembrane helices 810 19.31
CRISPR repeats 4 0.10
  1. The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
  2. Also includes 1 pseudogene