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Table 1 Classification and general features of Dickeya spp. bacteriophage ϕD3

From: The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.

MIGS ID

Property

Term

Evidence codea

 

Classification

Domain: Viruses, dsDNA viruses, no RNA viruses

TAS [5]

  

Phylum: unassigned

TAS [5]

  

Class: unassigned

TAS [5]

  

Order: Caudovirales

TAS [5]

  

Family: Myoviridae

TAS [5]

  

Genus: unassigned

TAS [5]

  

Species: unassigned

TAS [5]

 

Gram stain

Not applicable

TAS [5]

 

Particle shape

Icosahedral

IDA

 

Motility

Not applicable

TAS [5]

 

Sporulation

Not applicable

TAS [5]

 

Temperature range

Not applicable

TAS [5]

 

Optimum temperature

Not applicable

TAS [5]

 

pH range; Optimum

Not applicable

TAS [5]

 

Carbon source

Not applicable

TAS [5]

MIGS-6

Habitat

Soil

IDA

MIGS-6.3

Salinity

Not applicable

TAS [5]

MIGS-22

Oxygen requirement

Not applicable

TAS [5]

MIGS-15

Biotic relationship

Obligate intracellular parasite of Dickeya spp.

IDA

MIGS-14

Pathogenicity

Lytic virus of Dickeya spp.

IDA

MIGS-4

Geographic location

Poland / Kujawsko-Pomorskie (Kuyavian-Pomeranian Province)

IDA

MIGS-5

Sample collection

February 18, 2013

IDA

MIGS-4.1

Latitude

53.68 N

IDA

MIGS-4.2

Longitude

18.09 E

IDA

MIGS-4.3

Depth

20 cm

IDA

MIGS-4.4

Altitude

118 m

IDA

  1. aEvidence codes - IDA inferred from direct assay, TAS traceable author statement (i.e., a direct report exists in the literature), NAS non-traceable author statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [20]