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Fig. 3 | Standards in Genomic Sciences

Fig. 3

From: The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.

Fig. 3

Phage ϕD3 genome (a) and phylogenetic analysis (b). a The genome of bacteriophage ϕD3 (152,308 bp). Structural and functional annotations were obtained from IGS Annotation Service (http://ae.igs.umaryland.edu/cgi/index.cgi) and from RAST (http://rast.nmpdr.org/). ORFs coding for proteins involved in DNA metabolism, transcription and translation are marked in red, ORFs coding for proteins involved in phage particle assembly are marked in blue and ORFs coding for enzymes are marked in green. Arrows indicate the direction of transcription and translation. The ORFs coding for hypothetical proteins are not shown on the map. The figure was generated using a genome visualization tool – SnapGene ver. 2.6.2. b Maximum likelihood tree based on the aligned consensus nucleotide sequences (600 bp. long each) of gp20 genes of bacteriophages closely related to Dickeya sp. phage ϕD3. Enterobacteria phage T4 was used as an outgroup. Phylogenetic studies were performed using Phylip package. Bootstrap values (per 1000 replicates) are shown at branch points. The bar indicates the number of substitutions per sequence position

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