TY - JOUR AU - Skerman, V. B. D. AU - McGowan, V. AU - Sneath, P. H. A. PY - 1980 DA - 1980// TI - Approved lists of bacterial names JO - Int J Syst Bacteriol. VL - 30 UR - https://doi.org/10.1099/00207713-30-1-225 DO - 10.1099/00207713-30-1-225 ID - Skerman1980 ER - TY - JOUR AU - Fischer, A. PY - 1895 DA - 1895// TI - Untersuchungen über bakterien JO - Jahrbücher für Wissenschaftliche Botanik. VL - 27 ID - Fischer1895 ER - TY - STD TI - Taxon Abstract for the family Bacillaceae. NamesforLife, LLC. Retrieved June 13, 2015. http://dx.doi.org/10.1601/tx.4856. ID - ref3 ER - TY - JOUR AU - Goh, K. M. AU - Kahar, U. M. AU - Chai, Y. Y. AU - Chong, C. S. AU - Chai, K. P. AU - Ranjani, V. PY - 2013 DA - 2013// TI - Recent discoveries and applications of Anoxybacillus JO - Appl Microbiol Biotechnol. VL - 97 UR - https://doi.org/10.1007/s00253-012-4663-2 DO - 10.1007/s00253-012-4663-2 ID - Goh2013 ER - TY - JOUR AU - Pikuta, E. AU - Lysenko, A. AU - Chuvilskaya, N. AU - Mendrock, U. AU - Hippe, H. AU - Suzina, N. PY - 2000 DA - 2000// TI - Anoxybacillus pushchinensis gen. nov., sp. nov., a novel anaerobic, alkaliphilic, moderately thermophilic bacterium from manure, and description of Anoxybacillus flavithermus comb. nov JO - Int J Syst Evol Microbiol VL - 50 UR - https://doi.org/10.1099/00207713-50-6-2109 DO - 10.1099/00207713-50-6-2109 ID - Pikuta2000 ER - TY - JOUR AU - Pikuta, E. AU - Cleland, D. AU - Tang, J. PY - 2003 DA - 2003// TI - Aerobic growth of Anoxybacillus pushchinoensis K1T: emended descriptions of A. pushchinoensis and the genus Anoxybacillus JO - Int J Syst Evol Microbiol VL - 53 UR - https://doi.org/10.1099/ijs.0.02643-0 DO - 10.1099/ijs.0.02643-0 ID - Pikuta2003 ER - TY - JOUR AU - Gibbons, N. E. AU - Murray, R. G. E. PY - 1978 DA - 1978// TI - Proposals concerning the higher taxa of bacteria JO - Int J Syst Bacteriol. VL - 28 UR - https://doi.org/10.1099/00207713-28-1-1 DO - 10.1099/00207713-28-1-1 ID - Gibbons1978 ER - TY - CHAP AU - Ludwig, W. AU - Schleifer, K. -. H. AU - Whitman, W. B. ED - Vos, P. ED - Garrity, G. ED - Jones, D. ED - Krieg, N. R. ED - Ludwig, W. ED - Rainey, F. A. PY - 2009 DA - 2009// TI - Class I. Bacilli class nov BT - Bergey's manual of systematic bacteriology, volume 3 PB - Springer CY - New York ID - Ludwig2009 ER - TY - JOUR PY - 2010 DA - 2010// TI - List of new names and new combinations previously effectively, but not validly, published JO - Int J Syst Evol Microbiol VL - 60 UR - https://doi.org/10.1099/ijs.0.022855-0 DO - 10.1099/ijs.0.022855-0 ID - ref9 ER - TY - CHAP AU - Prévot, A. R. ED - Hauderoy, P. ED - Ehringer, G. ED - Guillot, G. ED - Magrou, J. ED - Prévot, A. R. ED - Rosset, D. PY - 1953 DA - 1953// BT - Dictionnaire des bactéries pathogènes PB - Masson et Cie CY - Paris ID - Prévot1953 ER - TY - JOUR AU - Rogers, E. E. AU - Backus, E. A. PY - 2014 DA - 2014// TI - Anterior foregut microbiota of the glassy-winged sharpshooter explored using deep 16S rRNA gene sequencing from individual insects JO - PLoS ONE. VL - 9 UR - https://doi.org/10.1371/journal.pone.0106215 DO - 10.1371/journal.pone.0106215 ID - Rogers2014 ER - TY - JOUR AU - Cihan, A. C. AU - Cokmus, C. AU - Koc, M. AU - Ozcan, B. PY - 2014 DA - 2014// TI - Anoxybacillus calidus sp. nov., a thermophilic bacterium isolated from soil near a thermal power plant JO - Int J Syst Evol Microbiol VL - 64 UR - https://doi.org/10.1099/ijs.0.056549-0 DO - 10.1099/ijs.0.056549-0 ID - Cihan2014 ER - TY - JOUR AU - Zhang, X. -. Q. AU - Zhang, Z. -. L. AU - Wu, N. AU - Zhu, X. -. F. AU - Wu, M. PY - 2013 DA - 2013// TI - Anoxybacillus vitaminiphilus sp. nov., a strictly aerobic and moderately thermophilic bacterium isolated from a hot spring JO - Int J Syst Evol Microbiol VL - 63 UR - https://doi.org/10.1099/ijs.0.050096-0 DO - 10.1099/ijs.0.050096-0 ID - Zhang2013 ER - TY - JOUR AU - Joshi, S. AU - Satyanarayana, T. PY - 2015 DA - 2015// TI - In vitro engineering of microbial enzymes with multifarious applications: prospects and perspectives JO - Bioresour Technol. VL - 176 UR - https://doi.org/10.1016/j.biortech.2014.10.151 DO - 10.1016/j.biortech.2014.10.151 ID - Joshi2015 ER - TY - JOUR AU - Kananavičiūtė, R. AU - Čitavičius, D. PY - 2015 DA - 2015// TI - Genetic engineering of Geobacillus spp JO - J Microbiol Methods. VL - 111 UR - https://doi.org/10.1016/j.mimet.2015.02.002 DO - 10.1016/j.mimet.2015.02.002 ID - Kananavičiūtė2015 ER - TY - JOUR AU - Chai, Y. Y. AU - Rahman, R. N. Z. R. A. AU - Illias, R. M. AU - Goh, K. M. PY - 2012 DA - 2012// TI - Cloning and characterization of two new thermostable and alkalitolerant α-amylases from the Anoxybacillus species that produce high levels of maltose JO - J Ind Microbiol Biotechnol. VL - 39 UR - https://doi.org/10.1007/s10295-011-1074-9 DO - 10.1007/s10295-011-1074-9 ID - Chai2012 ER - TY - JOUR AU - Xu, J. AU - Ren, F. AU - Huang, C. -. H. AU - Zheng, Y. AU - Zhen, J. AU - Sun, H. PY - 2014 DA - 2014// TI - Functional and structural studies of pullulanase from Anoxybacillus sp. LM18-11 JO - Proteins: Struct, Funct, Bioinf VL - 82 UR - https://doi.org/10.1002/prot.24498 DO - 10.1002/prot.24498 ID - Xu2014 ER - TY - JOUR AU - Kahar, U. M. AU - Chan, K. -. G. AU - Salleh, M. M. AU - Hii, S. M. AU - Goh, K. M. PY - 2013 DA - 2013// TI - A high molecular-mass Anoxybacillus sp. SK3-4 amylopullulanase: characterization and its relationship in carbohydrate utilization JO - Int J Mol Sci VL - 14 UR - https://doi.org/10.3390/ijms140611302 DO - 10.3390/ijms140611302 ID - Kahar2013 ER - TY - JOUR AU - Turner, P. AU - Labes, A. AU - Fridjónsson, Ó. H. AU - Hreggvidson, G. O. AU - Schönheit, P. AU - Kristjánsson, J. K. PY - 2005 DA - 2005// TI - Two novel cyclodextrin-degrading enzymes isolated from thermophilic bacteria have similar domain structures but differ in oligomeric state and activity profile JO - J Biosci Bioeng. VL - 100 UR - https://doi.org/10.1263/jbb.100.380 DO - 10.1263/jbb.100.380 ID - Turner2005 ER - TY - JOUR AU - Karaoglu, H. AU - Yanmis, D. AU - Sal, F. A. AU - Celik, A. AU - Canakci, S. AU - Belduz, A. O. PY - 2013 DA - 2013// TI - Biochemical characterization of a novel glucose isomerase from Anoxybacillus gonensis G2T that displays a high level of activity and thermal stability JO - J Mol Catal B Enzym. VL - 97 UR - https://doi.org/10.1016/j.molcatb.2013.08.019 DO - 10.1016/j.molcatb.2013.08.019 ID - Karaoglu2013 ER - TY - JOUR AU - Wang, J. AU - Bai, Y. AU - Yang, P. AU - Shi, P. AU - Luo, H. AU - Meng, K. PY - 2010 DA - 2010// TI - A new xylanase from thermoalkaline Anoxybacillus sp. E2 with high activity and stability over a broad pH range JO - World J Microbiol Biotechnol VL - 26 UR - https://doi.org/10.1007/s11274-009-0254-5 DO - 10.1007/s11274-009-0254-5 ID - Wang2010 ER - TY - JOUR AU - Canakci, S. AU - Kacagan, M. AU - Inan, K. AU - Belduz, A. O. AU - Saha, B. C. PY - 2008 DA - 2008// TI - Cloning, purification, and characterization of a thermostable α-L-arabinofuranosidase from Anoxybacillus kestanbolensis AC26Sari JO - Appl Microbiol Biotechnol. VL - 81 UR - https://doi.org/10.1007/s00253-008-1584-1 DO - 10.1007/s00253-008-1584-1 ID - Canakci2008 ER - TY - JOUR AU - Beris, F. S. AU - Smet, L. AU - Karaoglu, H. AU - Canakci, S. AU - Beeumen, J. AU - Belduz, A. O. PY - 2011 DA - 2011// TI - The ATPase activity of the G2alt gene encoding an aluminium tolerance protein from Anoxybacillus gonensis G2 JO - J Microbiol. VL - 49 UR - https://doi.org/10.1007/s12275-011-0522-6 DO - 10.1007/s12275-011-0522-6 ID - Beris2011 ER - TY - JOUR AU - Lim, J. C. AU - Goh, K. M. AU - Shamsir, M. S. AU - Ibrahim, Z. AU - Chong, C. S. PY - 2014 DA - 2014// TI - Characterization of aluminum resistant Anoxybacillus sp. SK3-4 isolated from a hot spring JO - J Basic Microbiol VL - 55 UR - https://doi.org/10.1002/jobm.201400621 DO - 10.1002/jobm.201400621 ID - Lim2014 ER - TY - JOUR AU - Jiang, D. AU - Li, P. AU - Jiang, Z. AU - Dai, X. AU - Zhang, R. AU - Wang, Y. PY - 2015 DA - 2015// TI - Chemolithoautotrophic arsenite oxidation by a thermophilic Anoxybacillus flavithermus strain TCC9-4 from a hot spring in Tengchong of Yunnan, China JO - Front Microbiol. VL - 6 UR - https://doi.org/10.3389/fmicb.2015.00360 DO - 10.3389/fmicb.2015.00360 ID - Jiang2015 ER - TY - JOUR AU - Chen, J. AU - Li, Y. AU - Hao, H. -. H. AU - Zheng, J. AU - Chen, J. -. M. PY - 2015 DA - 2015// TI - Fe(II)EDTA-NO reduction by a newly isolated thermophilic Anoxybacillus sp. HA from a rotating drum biofilter for NOx removal JO - J Microbiol Methods VL - 109 UR - https://doi.org/10.1016/j.mimet.2014.12.015 DO - 10.1016/j.mimet.2014.12.015 ID - Chen2015 ER - TY - JOUR AU - Nazina, T. N. AU - Tourova, T. P. AU - Poltaraus, A. B. AU - Novikova, E. V. AU - Grigoryan, A. A. AU - Ivanova, A. E. PY - 2001 DA - 2001// TI - Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans JO - Int J Syst Evol Microbiol VL - 51 UR - https://doi.org/10.1099/00207713-51-2-433 DO - 10.1099/00207713-51-2-433 ID - Nazina2001 ER - TY - JOUR AU - Cohn, F. PY - 1872 DA - 1872// TI - Untersuchungen über bakterien JO - Beiträge zur Biologie der Pflanzen. VL - 1 ID - Cohn1872 ER - TY - JOUR AU - Saw, J. H. AU - Mountain, B. W. AU - Feng, L. AU - Omelchenko, M. V. AU - Hou, S. AU - Saito, J. A. PY - 2008 DA - 2008// TI - Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1 JO - Genome Biol. VL - 9 UR - https://doi.org/10.1186/gb-2008-9-11-r161 DO - 10.1186/gb-2008-9-11-r161 ID - Saw2008 ER - TY - JOUR AU - Dulger, S. AU - Demirbag, Z. AU - Belduz, A. O. PY - 2004 DA - 2004// TI - Anoxybacillus ayderensis sp. nov. and Anoxybacillus kestanbolensis sp. nov JO - Int J Syst Evol Microbiol VL - 54 UR - https://doi.org/10.1099/ijs.0.02863-0 DO - 10.1099/ijs.0.02863-0 ID - Dulger2004 ER - TY - JOUR AU - Patel, B. K. C. PY - 2015 DA - 2015// TI - Draft genome sequence of Anoxybacillus strain BCO1, isolated from a thermophilic microbial mat colonizing the outflow of a bore well of the Great Artesian Basin of Australia JO - Genome Announc. VL - 3 ID - Patel2015 ER - TY - CHAP AU - Ogg, C. D. AU - Spanevello, M. D. AU - Patel, B. K. C. ED - Satyanarayana, T. ED - Littlechild, J. ED - Kawarabayasi, Y. PY - 2013 DA - 2013// TI - Exploring the ecology of thermophiles from Australia’s Great Artesian Basin during the genomic era BT - Thermophilic microbes in environmental and industrial biotechnology PB - Springer CY - New York UR - https://doi.org/10.1007/978-94-007-5899-5_2 DO - 10.1007/978-94-007-5899-5_2 ID - Ogg2013 ER - TY - JOUR AU - Poli, A. AU - Nicolaus, B. AU - Chan, K. -. G. AU - Kahar, U. M. AU - Chan, C. S. AU - Goh, K. M. PY - 2015 DA - 2015// TI - Genome sequence of Anoxybacillus thermarum AF/04T, isolated from the Euganean Hot Springs in Abano Terme, Italy JO - Genome Announc. VL - 3 UR - https://doi.org/10.1128/genomeA.00490-15 DO - 10.1128/genomeA.00490-15 ID - Poli2015 ER - TY - JOUR AU - Poli, A. AU - Romano, I. AU - Cordella, P. AU - Orlando, P. AU - Nicolaus, B. AU - Berrini, C. C. PY - 2009 DA - 2009// TI - Anoxybacillus thermarum sp. nov., a novel thermophilic bacterium isolated from thermal mud in Euganean hot springs, Abano Terme, Italy JO - Extremophiles VL - 13 UR - https://doi.org/10.1007/s00792-009-0274-y DO - 10.1007/s00792-009-0274-y ID - Poli2009 ER - TY - JOUR PY - 2011 DA - 2011// TI - List of new names and new combinations previously effectively, but not validly, published JO - Int J Syst Evol Microbiol VL - 61 UR - https://doi.org/10.1099/ijs.0.036640-0 DO - 10.1099/ijs.0.036640-0 ID - ref35 ER - TY - JOUR AU - Belduz, A. O. AU - Dulger, S. AU - Demirbag, Z. PY - 2003 DA - 2003// TI - Anoxybacillus gonensis sp. nov., a moderately thermophilic, xylose-utilizing, endospore-forming bacterium JO - Int J Syst Evol Microbiol VL - 53 UR - https://doi.org/10.1099/ijs.0.02473-0 DO - 10.1099/ijs.0.02473-0 ID - Belduz2003 ER - TY - JOUR AU - Coorevits, A. AU - Dinsdale, A. E. AU - Halket, G. AU - Lebbe, L. AU - Vos, P. AU - Landschoot, A. PY - 2011 DA - 2011// TI - Taxonomic revision of the genus Geobacillus: emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly ‘thermoglucosidasius’); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov JO - Int J Syst Evol Microbiol VL - 62 UR - https://doi.org/10.1099/ijs.0.030346-0 DO - 10.1099/ijs.0.030346-0 ID - Coorevits2011 ER - TY - JOUR AU - Rozanov, A. S. AU - Bryanskaya, A. V. AU - Kotenko, A. V. AU - Malup, T. K. AU - Peltek, S. E. PY - 2014 DA - 2014// TI - Draft genome sequence of Anoxybacillus flavithermus strain 25, isolated from the Garga hot spring in the Barguzin Valley, Baikal Region, Russian Federation JO - Genome Announc. VL - 2 ID - Rozanov2014 ER - TY - JOUR AU - Khalil, A. AU - Sivakumar, N. AU - Qaraw, S. PY - 2015 DA - 2015// TI - Genome sequence of Anoxybacillus flavithermus strain AK1, a thermophile isolated from a hot spring in Saudi Arabia JO - Genome Announc. VL - 3 UR - https://doi.org/10.1128/genomeA.00604-15 DO - 10.1128/genomeA.00604-15 ID - Khalil2015 ER - TY - JOUR AU - Lee, S. -. J. AU - Lee, Y. -. J. AU - Ryu, N. AU - Park, S. AU - Jeong, H. AU - Lee, S. J. PY - 2012 DA - 2012// TI - Draft genome sequence of the thermophilic bacterium Anoxybacillus kamchatkensis G10 JO - J Bacteriol. VL - 194 UR - https://doi.org/10.1128/JB.01877-12 DO - 10.1128/JB.01877-12 ID - Lee2012 ER - TY - JOUR AU - Kevbrin, V. V. AU - Zengler, K. AU - Lysenko, A. M. AU - Wiegel, J. PY - 2005 DA - 2005// TI - Anoxybacillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic bacterium with a broad pH optimum from the Geyser valley, Kamchatka JO - Extremophiles VL - 9 UR - https://doi.org/10.1007/s00792-005-0479-7 DO - 10.1007/s00792-005-0479-7 ID - Kevbrin2005 ER - TY - JOUR PY - 2006 DA - 2006// TI - List of new names and new combinations previously effectively, but not validly, published JO - Int J Syst Evol Microbiol VL - 56 UR - https://doi.org/10.1099/ijs.0.64380-0 DO - 10.1099/ijs.0.64380-0 ID - ref42 ER - TY - JOUR AU - Matsutani, M. AU - Shirakihara, Y. AU - Imada, K. AU - Yakushi, T. AU - Matsushita, K. PY - 2013 DA - 2013// TI - Draft genome sequence of a thermophilic member of the Bacillaceae, Anoxybacillus flavithermus strain Kn10, isolated from the Kan-nawa hot spring in Japan JO - Genome Announc. VL - 1 ID - Matsutani2013 ER - TY - JOUR AU - Caspers, M. P. M. AU - Boekhorst, J. AU - Abee, T. AU - Siezen, R. J. AU - Kort, R. PY - 2013 DA - 2013// TI - Complete genome sequence of Anoxybacillus flavithermus TNO-09.006, a thermophilic sporeformer associated with a dairy-processing environment JO - Genome Announc VL - 1 UR - https://doi.org/10.1128/genomeA.00010-13 DO - 10.1128/genomeA.00010-13 ID - Caspers2013 ER - TY - JOUR AU - Goh, K. M. AU - Gan, H. M. AU - Chan, K. -. G. AU - Chan, G. F. AU - Shahar, S. AU - Chong, C. S. PY - 2014 DA - 2014// TI - Analysis of Anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism JO - PLoS ONE. VL - 9 UR - https://doi.org/10.1371/journal.pone.0090549 DO - 10.1371/journal.pone.0090549 ID - Goh2014 ER - TY - JOUR AU - Chai, Y. Y. AU - Kahar, U. M. AU - Salleh, M. M. AU - Illias, R. M. AU - Goh, K. M. PY - 2012 DA - 2012// TI - Isolation and characterization of pullulan-degrading Anoxybacillus species isolated from Malaysian hot springs JO - Environ Technol. VL - 33 UR - https://doi.org/10.1080/09593330.2011.618935 DO - 10.1080/09593330.2011.618935 ID - Chai2012 ER - TY - JOUR AU - Wang, Y. AU - Zheng, Y. AU - Wang, M. AU - Gao, Y. AU - Xiao, Y. AU - Peng, H. PY - 2014 DA - 2014// TI - Non-contiguous finished genome sequence of Anoxybacillus flavithermus subsp. yunnanensis type strain (E13T), a strictly thermophilic and organic solvent-tolerant bacterium JO - Stand Genomic Sci VL - 9 UR - https://doi.org/10.4056/sigs.4968750 DO - 10.4056/sigs.4968750 ID - Wang2014 ER - TY - JOUR AU - Dai, J. AU - Liu, Y. AU - Lei, Y. AU - Gao, Y. AU - Han, F. AU - Xiao, Y. PY - 2011 DA - 2011// TI - A new subspecies of Anoxybacillus flavithermus ssp. yunnanensis ssp. nov. with very high ethanol tolerance JO - FEMS Microbiol Lett VL - 320 UR - https://doi.org/10.1111/j.1574-6968.2011.02294.x DO - 10.1111/j.1574-6968.2011.02294.x ID - Dai2011 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0 JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - JOUR AU - Kim, O. -. S. AU - Cho, Y. -. J. AU - Lee, K. AU - Yoon, S. -. H. AU - Kim, M. AU - Na, H. PY - 2012 DA - 2012// TI - Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes thatrepresent uncultured species JO - Int J Syst Evol Microbiol. VL - 62 UR - https://doi.org/10.1099/ijs.0.038075-0 DO - 10.1099/ijs.0.038075-0 ID - Kim2012 ER - TY - JOUR AU - Bolger, A. M. AU - Lohse, M. AU - Usadel, B. PY - 2014 DA - 2014// TI - Trimmomatic: a flexible trimmer for Illumina sequence data JO - Bioinformatics. VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu170 DO - 10.1093/bioinformatics/btu170 ID - Bolger2014 ER - TY - JOUR AU - Simpson, J. T. AU - Durbin, R. PY - 2010 DA - 2010// TI - Efficient construction of an assembly string graph using the FM-index JO - Bioinformatics. VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq217 DO - 10.1093/bioinformatics/btq217 ID - Simpson2010 ER - TY - JOUR AU - Peng, Y. AU - Leung, H. C. M. AU - Yiu, S. M. AU - Chin, F. Y. L. PY - 2012 DA - 2012// TI - IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth JO - Bioinformatics. VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts174 DO - 10.1093/bioinformatics/bts174 ID - Peng2012 ER - TY - JOUR AU - Hyatt, D. AU - Chen, G. -. L. AU - LoCascio, P. F. AU - Land, M. L. AU - Larimer, F. W. AU - Hauser, L. J. PY - 2010 DA - 2010// TI - Prodigal: prokaryotic gene recognition and translation initiation site identification JO - BMC Bioinformatics. VL - 11 UR - https://doi.org/10.1186/1471-2105-11-119 DO - 10.1186/1471-2105-11-119 ID - Hyatt2010 ER - TY - JOUR AU - Laslett, D. AU - Canback, B. PY - 2004 DA - 2004// TI - ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences JO - Nucleic Acids Res. VL - 32 UR - https://doi.org/10.1093/nar/gkh152 DO - 10.1093/nar/gkh152 ID - Laslett2004 ER - TY - JOUR AU - Lagesen, K. AU - Hallin, P. AU - Rødland, E. A. AU - Stærfeldt, H. -. H. AU - Rognes, T. AU - Ussery, D. W. PY - 2007 DA - 2007// TI - RNAmmer: consistent and rapid annotation of ribosomal RNA genes JO - Nucleic Acids Res. VL - 35 UR - https://doi.org/10.1093/nar/gkm160 DO - 10.1093/nar/gkm160 ID - Lagesen2007 ER - TY - JOUR AU - Magrane, M. AU - Consortium, U. PY - 2011 DA - 2011// TI - UniProt Knowledgebase: a hub of integrated protein data JO - Database VL - 2011 UR - https://doi.org/10.1093/database/bar009 DO - 10.1093/database/bar009 ID - Magrane2011 ER - TY - JOUR AU - Haft, D. H. AU - Selengut, J. D. AU - White, O. PY - 2003 DA - 2003// TI - The TIGRFAMs database of protein families JO - Nucleic Acids Res. VL - 31 UR - https://doi.org/10.1093/nar/gkg128 DO - 10.1093/nar/gkg128 ID - Haft2003 ER - TY - JOUR AU - Finn, R. D. AU - Bateman, A. AU - Clements, J. AU - Coggill, P. AU - Eberhardt, R. Y. AU - Eddy, S. R. PY - 2014 DA - 2014// TI - Pfam: the protein families database JO - Nucleic Acids Res. VL - 42 UR - https://doi.org/10.1093/nar/gkt1223 DO - 10.1093/nar/gkt1223 ID - Finn2014 ER - TY - JOUR AU - Grissa, I. AU - Vergnaud, G. AU - Pourcel, C. PY - 2007 DA - 2007// TI - CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats JO - Nucleic Acids Res. VL - 35 UR - https://doi.org/10.1093/nar/gkm360 DO - 10.1093/nar/gkm360 ID - Grissa2007 ER - TY - JOUR AU - Claudel-Renard, C. AU - Chevalet, C. AU - Faraut, T. AU - Kahn, D. PY - 2003 DA - 2003// TI - Enzyme-specific profiles for genome annotation: PRIAM JO - Nucleic Acids Res. VL - 31 UR - https://doi.org/10.1093/nar/gkg847 DO - 10.1093/nar/gkg847 ID - Claudel-Renard2003 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Sato, Y. AU - Kawashima, M. AU - Furumichi, M. AU - Tanabe, M. PY - 2014 DA - 2014// TI - Data, information, knowledge and principle: back to metabolism in KEGG JO - Nucleic Acids Res. VL - 42 UR - https://doi.org/10.1093/nar/gkt1076 DO - 10.1093/nar/gkt1076 ID - Kanehisa2014 ER - TY - JOUR AU - Tatusov, R. L. AU - Galperin, M. Y. AU - Natale, D. A. AU - Koonin, E. V. PY - 2000 DA - 2000// TI - The COG database: a tool for genome-scale analysis of protein functions and evolution JO - Nucleic Acids Res. VL - 28 UR - https://doi.org/10.1093/nar/28.1.33 DO - 10.1093/nar/28.1.33 ID - Tatusov2000 ER - TY - JOUR AU - Jones, P. AU - Binns, D. AU - Chang, H. -. Y. AU - Fraser, M. AU - Li, W. AU - McAnulla, C. PY - 2014 DA - 2014// TI - InterProScan 5: genome-scale protein function classification JO - Bioinformatics. VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu031 DO - 10.1093/bioinformatics/btu031 ID - Jones2014 ER - TY - JOUR AU - Yin, Y. AU - Mao, X. AU - Yang, J. AU - Chen, X. AU - Mao, F. AU - Xu, Y. PY - 2012 DA - 2012// TI - dbCAN: a web resource for automated carbohydrate-active enzyme annotation JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks479 DO - 10.1093/nar/gks479 ID - Yin2012 ER - TY - JOUR AU - Goris, J. AU - Konstantinidis, K. T. AU - Klappenbach, J. A. AU - Coenye, T. AU - Vandamme, P. AU - Tiedje, J. M. PY - 2007 DA - 2007// TI - DNA–DNA hybridization values and their relationship to whole-genome sequence similarities JO - Int J Syst Evol Microbiol. VL - 57 UR - https://doi.org/10.1099/ijs.0.64483-0 DO - 10.1099/ijs.0.64483-0 ID - Goris2007 ER - TY - JOUR AU - Ahmed, I. AU - Yokota, A. AU - Yamazoe, A. AU - Fujiwara, T. PY - 2007 DA - 2007// TI - Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov JO - Int J Syst Evol Microbiol VL - 57 UR - https://doi.org/10.1099/ijs.0.63867-0 DO - 10.1099/ijs.0.63867-0 ID - Ahmed2007 ER - TY - JOUR AU - Richter, M. AU - Rosselló-Móra, R. PY - 2009 DA - 2009// TI - Shifting the genomic gold standard for the prokaryotic species definition JO - Proc Natl Acad Sci U S A. VL - 106 UR - https://doi.org/10.1073/pnas.0906412106 DO - 10.1073/pnas.0906412106 ID - Richter2009 ER - TY - JOUR AU - Menon, V. AU - Rao, M. PY - 2012 DA - 2012// TI - Trends in bioconversion of lignocellulose: biofuels, platform chemicals and biorefinery concept JO - Prog Energy Combustion Sci. VL - 38 UR - https://doi.org/10.1016/j.pecs.2012.02.002 DO - 10.1016/j.pecs.2012.02.002 ID - Menon2012 ER - TY - JOUR AU - Çolak, A. AU - Şişik, D. AU - Saglam, N. AU - Güner, S. AU - Çanakçi, S. AU - Beldüz, A. O. PY - 2005 DA - 2005// TI - Characterization of a thermoalkalophilic esterase from a novel thermophilic bacterium, Anoxybacillus gonensis G2 JO - Bioresour Technol. VL - 96 UR - https://doi.org/10.1016/j.biortech.2004.06.003 DO - 10.1016/j.biortech.2004.06.003 ID - Çolak2005 ER - TY - JOUR AU - Faiz, Ö. AU - Colak, A. AU - Saglam, N. AU - Çanakçi, S. AU - Beldüz, A. O. PY - 2007 DA - 2007// TI - Determination and characterization of thermostable esterolytic activity from a novel thermophilic bacterium Anoxybacillus gonensis A4 JO - J Biochem Mol Biol. VL - 40 UR - https://doi.org/10.5483/BMBRep.2007.40.4.588 DO - 10.5483/BMBRep.2007.40.4.588 ID - Faiz2007 ER - TY - JOUR AU - Ay, F. AU - Karaoglu, H. AU - Inan, K. AU - Canakci, S. AU - Belduz, A. O. PY - 2011 DA - 2011// TI - Cloning, purification and characterization of a thermostable carboxylesterase from Anoxybacillus sp. PDF1 JO - Protein Expr Purif VL - 80 UR - https://doi.org/10.1016/j.pep.2011.06.019 DO - 10.1016/j.pep.2011.06.019 ID - Ay2011 ER - TY - JOUR AU - Ertunga, N. S. AU - Colak, A. AU - Belduz, A. O. AU - Canakci, S. AU - Karaoglu, H. AU - Sandalli, C. PY - 2007 DA - 2007// TI - Cloning, expression, purification and characterization of fructose-1,6-bisphosphate aldolase from Anoxybacillus gonensis G2 JO - J Biochem. VL - 141 UR - https://doi.org/10.1093/jb/mvm085 DO - 10.1093/jb/mvm085 ID - Ertunga2007 ER - TY - JOUR AU - Field, D. AU - Garrity, G. AU - Gray, T. AU - Morrison, N. AU - Selengut, J. AU - Sterk, P. PY - 2008 DA - 2008// TI - The minimum information about a genome sequence (MIGS) specification JO - Nat Biotechnol. VL - 26 UR - https://doi.org/10.1038/nbt1360 DO - 10.1038/nbt1360 ID - Field2008 ER - TY - JOUR AU - Woese, C. R. AU - Kandler, O. AU - Wheelis, M. L. PY - 1990 DA - 1990// TI - Towards a natural system of organisms: proposal for the domains archaea, bacteria, and eucarya JO - Proc Natl Acad Sci U S A. VL - 87 UR - https://doi.org/10.1073/pnas.87.12.4576 DO - 10.1073/pnas.87.12.4576 ID - Woese1990 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The gene ontology consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Shida, O. AU - Takagi, H. AU - Kadowaki, K. AU - Komagata, K. PY - 1996 DA - 1996// TI - Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov JO - Int J Syst Bacteriol VL - 46 UR - https://doi.org/10.1099/00207713-46-4-939 DO - 10.1099/00207713-46-4-939 ID - Shida1996 ER -