Table 8 Taxonomic composition of the sample
Domain | Phylum | Class* | JREM1 Riffles_WGS | JREM1 Riffles_16S |
|---|---|---|---|---|
Archaea | Â | Â | 9138 | Â |
| Â | Crenarchaeota | Thermoprotei | 1246 | Â |
| Â | Euryarchaeota | Archaeoglobi | 291 | Â |
| Â | Euryarchaeota | Halobacteria | 1799 | Â |
| Â | Euryarchaeota | Methanococci | 806 | Â |
| Â | Euryarchaeota | Methanobacteria | 692 | Â |
|  | Euryarchaeota | ‘Methanomicrobia’ | 2425 |  |
| Â | Euryarchaeota | Thermococci | 691 | Â |
| Â | Euryarchaeota | Thermoplasmata | 271 | Â |
| Â | Euryarchaeota | unclassified | 377 | Â |
| Â | Thaumarchaeota | unclassified | 270 | Â |
| Â | unclassified | unclassified | 115 | Â |
Bacteria | Â | Â | 3420971 | 3704883 |
| Â | Acidobacteria | Acidobacteria | 2215 | Â |
|  | Acidobacteria | ‘Solibacteres’ | 4191 | 41 |
| Â | Acidobacteria | unclassified | 1743 | Â |
| Â | Actinobacteria | Actinobacteria | 546521 | 382055 |
| Â | Aquificae | Aquificae | 2166 | Â |
| Â | Bacteroidetes | Bacteroidia | 38414 | 1306 |
| Â | Bacteroidetes | Cytophagia | 224023 | Â |
| Â | Bacteroidetes | Flavobacteriia | 178112 | 526723 |
| Â | Bacteroidetes | Sphingobacteriia | 57455 | 516940 |
| Â | Bacteroidetes | unclassified | 7043 | 6954 |
|  | Chlamydiae | ‘Chlamydiia’ | 1621 |  |
|  | Chlorobi | ‘Chlorobia’ | 10540 |  |
| Â | Chloroflexi | Anaerolineae | 441 | 679 |
| Â | Chloroflexi | Dehalococcoidetes | 836 | Â |
| Â | Chloroflexi | Chloroflexi | 5898 | Â |
| Â | Chloroflexi | Ktedonobacteria | 789 | Â |
| Â | Chloroflexi | Thermomicrobia | 1342 | Â |
| Â | Cyanobacteria | Gloeobacteria | 1075 | Â |
| Â | Cyanobacteria | Cyanobacteria | 25512 | 32848 |
| Â | Deferribacteres | Deferribacteres | 937 | Â |
| Â | Deinococcus-Thermus | Deinococci | 6560 | 1816 |
| Â | Dictyoglomi | Dictyoglomia | 513 | Â |
| Â | Firmicutes | Bacilli | 29929 | 8601 |
| Â | Firmicutes | Clostridia | 30400 | 19916 |
|  | Firmicutes | ‘Erysipelotrichi’ | 196 |  |
| Â | Firmicutes | Negativicutes | 2278 | Â |
| Â | Firmicutes | unclassified | Â | 696 |
| Â | Fusobacteriia | Fusobacteriia | 2224 | 837 |
| Â | Gemmatimonadetes | Gemmatimonadetes | 1484 | Â |
|  | Nitrospirae | ‘Nitrospira’ | 1799 | 1483 |
| Â | Planctomycetes | Planctomycetia | 12967 | 49 |
| Â | Proteobacteria | Alphaproteobacteria | 220054 | 151267 |
| Â | Proteobacteria | Betaproteobacteria | 1597220 | 1225776 |
| Â | Proteobacteria | Deltaproteobacteria | 36851 | 9357 |
| Â | Proteobacteria | Epsilonproteobacteria | 6449 | 3645 |
| Â | Proteobacteria | Gammaproteobacteria | 322470 | 667102 |
|  | Proteobacteria | ‘Zetaproteobacteria’ | 632 |  |
| Â | Proteobacteria | unclassified | 6963 | 12414 |
| Â | Spirochaetes | Brachyspirae | Â | 385 |
| Â | Spirochaetes | Spirochaetia | 4917 | 815 |
| Â | Synergistetes | Synergistia | 1086 | 17795 |
| Â | Tenericutes | Mollicutes | 1478 | 1697 |
| Â | Thermotogae | Thermotogae | 2105 | 1004 |
| Â | Verrucomicrobia | Lentisphaerae | 1099 | Â |
|  | Verrucomicrobia | ‘Methylacidiphilae’ |  | 722 |
| Â | Verrucomicrobia | Opitutae | 4479 | 46474 |
|  | Verrucomicrobia | ‘Spartobacteria’ | 2286 | 678 |
| Â | Verrucomicrobia | Verrucomicrobiae | 5061 | 1135 |
| Â | Verrucomicrobia | unclassified | 350 | Â |
| Â | unclassified | unclassified | 6087 | 61031 |
Eukaryota | Â | Â | 66903 | Â |
| Â | Apicomplexa | Aconoidasida | 885 | Â |
| Â | Apicomplexa | Coccidia | 443 | Â |
| Â | Arthropoda | Arachnida | 300 | Â |
| Â | Arthropoda | Branchiopoda | 606 | Â |
| Â | Arthropoda | Insecta | 4901 | Â |
| Â | Ascomycota | Dothideomycetes | 808 | Â |
| Â | Ascomycota | Eurotiomycetes | 3193 | Â |
| Â | Ascomycota | Leotiomycetes | 353 | Â |
| Â | Ascomycota | Pezizomycetes | 119 | Â |
| Â | Ascomycota | Saccharomycetes | 2579 | Â |
| Â | Ascomycota | Schizosaccharomycetes | 429 | Â |
| Â | Ascomycota | Sordariomycetes | 2809 | Â |
| Â | Bacillariophyta | Bacillariophyceae | 317 | Â |
| Â | Basidiomycota | Agaricomycetes | 920 | Â |
| Â | Basidiomycota | Tremellomycetes | 414 | Â |
| Â | Basidiomycota | unclassified | 156 | Â |
| Â | Chlorophyta | Chlorophyceae | 1145 | Â |
| Â | Chlorophyta | Mamiellophyceae | 1032 | Â |
| Â | Chlorophyta | Trebouxiophyceae | 299 | Â |
| Â | Chordata | Actinopterygii | 1986 | Â |
| Â | Chordata | Amphibia | 7102 | Â |
| Â | Chordata | Ascidiacea | 264 | Â |
| Â | Chordata | Aves | 473 | Â |
| Â | Chordata | Mammalia | 4801 | Â |
| Â | Chordata | unclassified | 487 | Â |
| Â | Ciliophora | Oligohymenophorea | 1052 | Â |
| Â | Cnidaria | Anthozoa | 1749 | Â |
| Â | Cnidaria | Hydrozoa | 8973 | Â |
| Â | Echinodermata | Echinoidea | 348 | Â |
| Â | Hemichordata | Enteropneusta | 209 | Â |
| Â | Heterolobosea | Heterolobosea | 440 | Â |
| Â | Ichthyosporea | Ichthyosporea | 291 | Â |
| Â | Microsporidia | unclassified | 127 | Â |
| Â | Nematoda | Chromadorea | 1450 | Â |
| Â | Nematoda | Enoplea | 111 | Â |
| Â | Phaeophyceae | unclassified | 347 | Â |
| Â | Placozoa | unclassified | 246 | Â |
| Â | Platyhelminthes | Trematoda | 191 | Â |
| Â | Rhodophyta | Bangiophyceae | 206 | Â |
| Â | Streptophyta | Appendicularia | 259 | Â |
| Â | Streptophyta | Coniferopsida | 253 | Â |
| Â | Streptophyta | Isoetopsida | 306 | Â |
| Â | Streptophyta | Liliopsida | 2100 | Â |
| Â | Streptophyta | unclassified | 7129 | Â |
| Â | unclassified | unclassified | 3558 | Â |
Viruses | Â | Â | 7684 | Â |
Other** | Â | Â | 3204 | Â |