Strain | NB10 | 775 | M3 |
---|
Chromosome 1 (bp) | 3,119,695 | 3,063,912 | 3,063,587 |
Chromosome 2 (bp) | 1,187,342 | 988,135 | 988,134 |
Plasmid (bp) | 66,798 | 65,009 | 66,164 |
Total CDSsa
| 3,782 | 3,880 | 3,824 |
Prophage | | | |
intact | 44.1 kb | 0 | 0 |
incomplete | 8.3 kb | 8.3 kb | 25.7 kb |
| | | 8.3 kb |
questionable | 45.7 kb | 0 | 0 |
Genomic Islandsb
| | | |
Chr1 | 19 (208.2 kb) | 18 (209.5 kb) | 17 (211.6 kb) |
Chr2 | 10 (147.0 kb) | 8 (74.3 kb) | 5 (62.5 kb) |
Number of attC sitesc
| 65 | 64 | 68 |
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aAnnotation of the NB10 strain included fewer CDSs under 200 bp than that of strains 775 and M3
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bNumbers represent all genomic islands detected by the IslandViewer tool irrespective of their size or content
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cNumbers indicate attC sites found with a consensus sequence of 5'-TAACAAACGnnTCAAGAGGGAnnGnCAACGC-3'. This sequence makes up a repeat region at the 5’end of the 126-127-bp attC sites within the NB10 strain, (unpublished data, K.O. Holm) and indicates the number of integron-associated gene cassettes found in each strain [48]. The attC sites occur solely within chromosome 2 but are distributed differently in the three strains