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Table 6 Genome comparisons of sequenced V. anguillarum serotype O1 strains

From: Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia

Strain

NB10

775

M3

Chromosome 1 (bp)

3,119,695

3,063,912

3,063,587

Chromosome 2 (bp)

1,187,342

988,135

988,134

Plasmid (bp)

66,798

65,009

66,164

Total CDSsa

3,782

3,880

3,824

Prophage

   

 intact

44.1 kb

0

0

 incomplete

8.3 kb

8.3 kb

25.7 kb

   

8.3 kb

 questionable

45.7 kb

0

0

Genomic Islandsb

   

 Chr1

19 (208.2 kb)

18 (209.5 kb)

17 (211.6 kb)

 Chr2

10 (147.0 kb)

8 (74.3 kb)

5 (62.5 kb)

Number of attC sitesc

65

64

68

  1. aAnnotation of the NB10 strain included fewer CDSs under 200 bp than that of strains 775 and M3
  2. bNumbers represent all genomic islands detected by the IslandViewer tool irrespective of their size or content
  3. cNumbers indicate attC sites found with a consensus sequence of 5'-TAACAAACGnnTCAAGAGGGAnnGnCAACGC-3'. This sequence makes up a repeat region at the 5’end of the 126-127-bp attC sites within the NB10 strain, (unpublished data, K.O. Holm) and indicates the number of integron-associated gene cassettes found in each strain [48]. The attC sites occur solely within chromosome 2 but are distributed differently in the three strains