Table 4 Number of genes associated with general COG functional categories
From: Draft genome sequence of ‘Treponema phagedenis’ strain V1, isolated from bovine digital dermatitis
Code | Value | %age | Description |
|---|---|---|---|
J | 152 | 4.8 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 132 | 4.2 | Transcription |
L | 263 | 8.3 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 33 | 1.0 | Cell cycle control, Cell division, chromosome partitioning |
V | 74 | 2.3 | Defense mechanisms |
T | 139 | 4.4 | Signal transduction mechanisms |
M | 123 | 3.9 | Cell wall/membrane biogenesis |
N | 102 | 3.2 | Cell motility |
U | 41 | 1.3 | Intracellular trafficking and secretion |
O | 85 | 2.3 | Posttranslational modification, protein turnover, chaperones |
C | 114 | 3.6 | Energy production and conversion |
G | 223 | 7.0 | Carbohydrate transport and metabolism |
E | 156 | 4.9 | Amino acid transport and metabolism |
F | 57 | 1.8 | Nucleotide transport and metabolism |
H | 57 | 1.8 | Coenzyme transport and metabolism |
I | 41 | 1.3 | Lipid transport and metabolism |
P | 119 | 3.7 | Inorganic ion transport and metabolism |
Q | 15 | 0.5 | Secondary metabolites biosynthesis, transport and catabolism |
R | 313 | 9.8 | General function prediction only |
S | 170 | 5.4 | Function unknown |
- | 1115 | 35.2 | Not in COGs |