Table 3 Genome statistics
From: Draft genome sequence of ‘Treponema phagedenis’ strain V1, isolated from bovine digital dermatitis
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,129,551 | 100.0 |
DNA coding (bp) | 2,623,392 | 83.8 |
DNA G + C (bp) | 1,249,392 | 39.9 |
DNA scaffolds | 51 | 100.0 |
Total genes | 3,222 | 100.0 |
Protein coding genes | 3,157 | 98 |
RNA genes | 51 | 1.6 |
Pseudo genes | 9 | 0.3 |
Genes in internal clusters | ||
Genes with function prediction | 1,547 | 48 |
Genes assigned to COGs | 2,051 | 63.7 |
Genes with Pfam domains | 1,788 | 55.5 |
Genes with signal peptides | 187 | 5.8 |
Genes with transmembrane helices | 791 | 24.5 |
CRISPR repeats |