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Table 4 Number of genes associated with general COG functional categories in P. putida SQ1

From: Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1

Code Value % agea Description
J 167 4.60 Translation, ribosomal structure and biogenesis
A 1 0.03 RNA processing and modification
K 323 8.90 Transcription
L 107 2.95 Replication, recombinant and repair
B 1 0.03 Chromatin structure and dynamics
D 28 0.77 Cell cycle control, Cell division, chromosome partitioning
V 40 1.10 Defense mechanisms
T 204 5.62 Signal transduction mechanisms
M 179 4.93 Cell wall/membrane/envelope biogenesis
N 99 2.73 Cell motility
U 107 2.95 Intracellular trafficking, secretion, and vesicular transport
O 143 3.94 Posttranslational modification, protein turnover, chaperones
C 221 6.09 Energy production and conversion
G 183 5.04 Carbohydrate transport and metabolism
E 369 10.17 Amino acid transport and metabolism
F 87 2.40 Nucleotide transport and metabolism
H 158 4.35 Coenzyme transport and metabolism
I 147 4.05 Lipid transport and metabolism
P 216 5.95 Inorganic ion transport and metabolism
Q 91 2.51 Secondary metabolites biosynthesis, transport and catabolism
R 423 11.66 General function prediction only
S 335 9.23 Function unknown
- 2,676 45.16 Not in COGs
  1. a) The total is based on the total number of protein coding genes in the annotated genome