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Table 5 Number of genes associated with general COG functional categories

From: Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park

Code

Value

Percent

Description

J

156

5.4

Translation, ribosomal structure and biogenesis

A

0

0

RNA processing and modification

K

195

6.8

Transcription

L

208

7.2

Replication, recombination and repair

B

1

0.03

Chromatin structure and dynamics

D

30

1.0

Cell cycle control, cell division, chromosome partitioning

V

44

1.5

Defense mechanisms

T

116

4.0

Signal transduction mechanisms

M

103

3.6

Cell wall/membrane/envelope biogenesis

N

61

2.1

Cell motility

U

48

1.7

Intracellular trafficking, secretion, and vesicular transport

O

100

3.5

Posttranslational modification, protein turnover, chaperones

C

207

7.2

Energy production and conversion

G

194

6.7

Carbohydrate transport and metabolism

E

285

9.9

Amino acid transport and metabolism

F

72

2.5

Nucleotide transport and metabolism

H

132

4.6

Coenzyme transport and metabolism

I

105

3.6

Lipid transport and metabolism

P

160

5.6

Inorganic ion transport and metabolism

Q

71

2.5

Secondary metabolites biosynthesis, transport and catabolism

R

330

11.5

General function prediction only

S

261

9.1

Function unknown

 

1528

37.0

Not in COGs

  1. The total is based on the total number of protein coding genes in the annotated genome