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Table 3 Project information

From: High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae

MIGS ID

Property

Term

strain ACC19a

strain CM2

strain CM5

strain OBRC8

strain AS15

MIGS-31

Finishing quality

High-Quality Draft Genome Sequence

MIGS-28

Libraries used

Two 454 pyrosequencing libraries, one standard 0.6 kb fragment library and one 2.5 kb jump library

Two Illumina libraries, one standard 180 bp fragment library and one 3-5 kb jump library

Two 454 pyrosequencing libraries, one standard 0.6 kb fragment library and one 2.5 kb jump library

Standard Illumina paired-end library

Standard Illumina paired-end library

MIGS-29

Sequencing platforms

454 FLX Titanium

Illumina HiSeq 2000

454 FLX Titanium

Illumina HiSeq 2000

Illumina HiSeq 2000

MIGS-31.2

Fold coverage

40×

282×

39×

32×

31×

MIGS-30

Assemblers

Newbler v.2.3

ALLPATHS v. R39099

Newbler v.2.3

Celera Assembler v.6.1

Celera Assembler v.6.1

MIGS-32

Gene calling method

PRODIGAL

PRODIGAL

PRODIGAL

GLIMMER

GLIMMER

Locus Tag

HMPREF9629

HMPREF9630

HMPREF9628

HMPREF1143

HMPREF1142

GenBank ID

AFZE00000000

AFZF00000000

AFZG00000000

ALNK00000000

ALJM00000000

GenBank Date of Release

Dec 19, 2011

Dec 14, 2011

Dec 19, 2011

Aug 27, 2012

Aug 13, 2012

GOLD ID

Gi06852

Gi06853

Gi06851

Gi09663

Gi09662

BIOPROJECT

49887

49889

49891

78565

78563

MIGS 13

Source Material Identifier

HM-483; DSM 28705; ATCC BAA-2665

HM-484; DSM 28703; ATCC BAA-2664

HM-485; DSM 28704

HM-765; DSM 28706

HM-766; DSM 28702; ATCC BAA-2661

Project relevance

Human Microbiome Project