Attribute | strain ACC19a | strain CM2 | strain CM5 | strain OBRC8 | strain AS15 | |||||
---|---|---|---|---|---|---|---|---|---|---|
Value | %a | Value | %a | Value | %a | Value | %a | Value | %a | |
Genome size (bp) | 254, 1543 | 100 | 231, 259, 2 | 100 | 259, 424, 2 | 100 | 255, 327, 6 | 100 | 265, 463, 8 | 100 |
DNA coding region (bp) | 215, 2064 | 85 | 196, 164, 0 | 85 | 219, 838, 6 | 85 | 217, 178, 3 | 85 | 220, 441, 4 | 83 |
DNA G + C (bp) | 771, 857 | 30 | 695, 842 | 30 | 790, 067 | 30 | 783, 396 | 31 | 855, 775 | 32 |
DNA scaffolds | 59 | 100 | 19 | 100 | 106 | 100 | 40 | 100 | 52 | 100 |
Total genes | 2, 331 | 100 | 2, 030 | 100 | 2, 379 | 100 | 2, 313 | 100 | 2, 336 | 100 |
Protein coding genes | 2, 277 | 98 | 1, 973 | 97 | 2, 325 | 98 | 2, 277 | 98 | 2, 308 | 99 |
RNA genes | 54 | 2 | 57 | 3 | 54 | 2 | 36 | 2 | 28 | 1 |
Pseudo genes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Genes in internal clusters | 21 | 1 | 4 | 0 | 18 | 1 | 4 | 0 | 10 | 0 |
Genes with function prediction | 1, 811 | 78 | 1, 618 | 80 | 1, 873 | 79 | 1, 868 | 81 | 1, 915 | 82 |
Genes assigned to COGs | 1, 404 | 60 | 1, 362 | 67 | 1, 448 | 61 | 1, 422 | 61 | 1, 472 | 63 |
Genes with Pfam domains | 1, 856 | 80 | 1, 636 | 81 | 1, 917 | 81 | 1, 822 | 79 | 1, 851 | 79 |
Genes with signal peptides | 129 | 6 | 120 | 6 | 130 | 6 | 131 | 6 | 174 | 7 |
Genes with transmembrane helices | 531 | 23 | 455 | 22 | 505 | 21 | 514 | 22 | 616 | 26 |
CRISPR repeats | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |