Table 5 Percentage of genes associated with the 25 general COG functional categories for P. enshiensis DW2-9T, H. missouriensis CCUG 52307T and H. massiliensis CCUG 47968T
From: Draft genomic sequence of a selenite-reducing bacterium, Paenirhodobacter enshiensis DW2-9T
Code | COG description | P. enshiensis DW2-9T | H. missouriensis CCUG 52307T | H. massiliensis CCUG 47968T |
|---|---|---|---|---|
J | Translation | 5.54 | 4.26 | 4.23 |
A | RNA processing and modification | 0.00 | 0.00 | 0.00 |
K | Transcription | 4.93 | 4.82 | 4.99 |
L | Replication, recombination and repair | 3.34 | 3.27 | 3.28 |
B | Chromatin structure and dynamics | 0.04 | 0.03 | 0.00 |
D | Cell cycle control, mitosis and meiosis | 0.89 | 0.97 | 0.92 |
Y | Nuclear structure | 0.00 | 0.00 | 0.00 |
V | Defense mechanisms | 1.29 | 1.11 | 0.89 |
T | Signal transduction mechanisms | 2.98 | 2.19 | 2.57 |
M | Cell wall/membrane biogenesis | 4.46 | 3.71 | 3.76 |
N | Cell motility | 1.04 | 0.69 | 0.58 |
Z | Cytoskeleton | 0.00 | 0.00 | 0.00 |
W | Extracellular structures | 0.00 | 0.00 | 0.00 |
U | Intracellular trafficking and secretion | 1.91 | 2.05 | 1.45 |
O | Posttranslational modification, protein turnover, chaperones | 3.31 | 3.16 | 3.10 |
C | Energy production and conversion | 5.57 | 5.20 | 5.10 |
G | Carbohydrate transport and metabolism | 3.49 | 3.82 | 3.60 |
E | Amino acid transport and metabolism | 13.84 | 10.96 | 11.09 |
F | Nucleotide transport and metabolism | 2.80 | 2.25 | 2.29 |
H | Coenzyme transport and metabolism | 4.17 | 3.63 | 3.47 |
I | Lipid transport and metabolism | 3.02 | 4.43 | 4.60 |
P | Inorganic ion transport and metabolism | 5.83 | 6.17 | 7.12 |
Q | Secondary metabolites biosynthesis, transport and catabolism | 1.83 | 2.71 | 2.52 |
R | General function prediction only | 9.46 | 9.63 | 9.77 |
S | Function unknown | 6.69 | 6.84 | 7.02 |
- | Not in COGs | 21.01 | 18.11 | 17.66 |