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Table 6 Number of genes associated with general COG functional categories in the pT29A plasmid genome

From: Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary

Code

Value

%age

Description

J

0

0.0

Translation, ribosomal structure and biogenesis

A

0

0.0

RNA processing and modification

K

8

8.9

Transcription

L

10

11.1

Replication, recombination and repair

B

4

0.1

Chromatin structure and dynamics

D

1

1.1

Cell cycle control, Cell division, chromosome partitioning

V

0

0.0

Defense mechanisms

T

7

7.8

Signal transduction mechanisms

M

0

0.0

Cell wall/membrane biogenesis

N

0

0.0

Cell motility

U

0

0.0

Intracellular trafficking and secretion

O

0

0.0

Posttranslational modification, protein turnover, chaperones

C

3

3.3

Energy production and conversion

G

0

0.0

Carbohydrate transport and metabolism

E

1

1.1

Amino acid transport and metabolism

F

0

0.0

Nucleotide transport and metabolism

H

19

21.1

Coenzyme transport and metabolism

I

0

0.0

Lipid transport and metabolism

P

5

5.6

Inorganic ion transport and metabolism

Q

0

0.0

Secondary metabolites biosynthesis, transport and catabolism

R

4

4.4

General function prediction only

S

10

11.1

Function unknown

-

22

24.4

Not in COGs

  1. The total is based on the total number of protein coding genes in the plasmid genome