Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark

Table 3 Genome statistics

Attribute	Strain
	S1		S12		S17		S18		S19		S32
	Value	%	Value	%	Value	%	Value	%	Value	%	Value	%
Contigs	24	-	57	-	20	-	103	-	34	-	89	-
Genome size (bp)	2,762,808	100	2,896,725	100	2,786,673	100	2,888,656	100	2,969,229	100	3,037,709	100
DNA coding region (bp)	2,443,661	88.45	2,539,142	87.66	2,451,937	87.99	2,539,829	87.92	2,579,002	86.86	2,639,903	86.90
DNA G + C content (bp)	1,038,816	37.6	1,083,375	37.4	1,045,002	37.5	1,080,357	37.4	1,104,553	37.2	1,130,028	37.2
Total genes	2,701	100	2,864	100	2,706	100	2,892	100	2,962	100	3,043	100
Protein-coding genes	2,615	98.09	2,769	98.09	2,625	98.21	2,804	98.15	2,853	98.15	2,935	98.17
RNA genes	52	1.93	54	1.89	48	1.77	52	1.80	53	1.79	55	1.81
Pseudo genes	35	1.30	43	1.50	34	1.26	36	1.24	59	1.99	63	2.07
Genes in internal clusters	1,150	42.58	1,228	42.88	1,127	41.65	1,256	43.43	1,265	42.71	1,313	43.15
Genes with function prediction	2,002	76.56	2,006	72.44	1,949	74.25	2,001	71.36	2,058	72.13	2,073	70.63
Genes assigned to COGs	2,011	76.90	2,024	73.09	1,980	75.43	2,025	72.22	2,049	71.82	2,084	71.01
Genes with Pfam domains	2,268	86.73	2,313	83.53	2,231	84.99	2,282	81.38	2,318	81.25	2,374	80.89
Genes with signal peptides	575	21.99	614	22.17	600	22.86	590	21.04	632	22.15	639	21.77
Genes with transmembrane helices	729	27.88	769	27.77	756	28.80	754	26.89	779	27.30	797	27.16
CRISPR repeats	1	-	1	-	2	-	1	-	2	-	1	-

The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome

ISSN: 2524-6372