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Table 3 Genome statistics

From: Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark

Attribute Strain
S1 S12 S17 S18 S19 S32
Value % Value % Value % Value % Value % Value %
Contigs 24 - 57 - 20 - 103 - 34 - 89 -
Genome size (bp) 2,762,808 100 2,896,725 100 2,786,673 100 2,888,656 100 2,969,229 100 3,037,709 100
DNA coding region (bp) 2,443,661 88.45 2,539,142 87.66 2,451,937 87.99 2,539,829 87.92 2,579,002 86.86 2,639,903 86.90
DNA G + C content (bp) 1,038,816 37.6 1,083,375 37.4 1,045,002 37.5 1,080,357 37.4 1,104,553 37.2 1,130,028 37.2
Total genes 2,701 100 2,864 100 2,706 100 2,892 100 2,962 100 3,043 100
Protein-coding genes 2,615 98.09 2,769 98.09 2,625 98.21 2,804 98.15 2,853 98.15 2,935 98.17
RNA genes 52 1.93 54 1.89 48 1.77 52 1.80 53 1.79 55 1.81
Pseudo genes 35 1.30 43 1.50 34 1.26 36 1.24 59 1.99 63 2.07
Genes in internal clusters 1,150 42.58 1,228 42.88 1,127 41.65 1,256 43.43 1,265 42.71 1,313 43.15
Genes with function prediction 2,002 76.56 2,006 72.44 1,949 74.25 2,001 71.36 2,058 72.13 2,073 70.63
Genes assigned to COGs 2,011 76.90 2,024 73.09 1,980 75.43 2,025 72.22 2,049 71.82 2,084 71.01
Genes with Pfam domains 2,268 86.73 2,313 83.53 2,231 84.99 2,282 81.38 2,318 81.25 2,374 80.89
Genes with signal peptides 575 21.99 614 22.17 600 22.86 590 21.04 632 22.15 639 21.77
Genes with transmembrane helices 729 27.88 769 27.77 756 28.80 754 26.89 779 27.30 797 27.16
CRISPR repeats 1 - 1 - 2 - 1 - 2 - 1 -
  1. The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome