TY - JOUR AU - Halpern, M. AU - Shaked, T. AU - Pukall, R. AU - Schumann, P. PY - 2009 DA - 2009// TI - Leucobacter chironomi sp. nov., a chromate resistant bacterium isolated from a chironomid egg mass JO - Int J Syst Evol Microbiol VL - 59 UR - https://doi.org/10.1099/ijs.0.004663-0 DO - 10.1099/ijs.0.004663-0 ID - Halpern2009 ER - TY - JOUR AU - Takeuchi, M. AU - Weiss, N. AU - Schuman, P. AU - Yokota, A. PY - 1996 DA - 1996// TI - Leucobacter komagatae gen. nov., sp. nov., a new aerobic gram-positive, nonsporulating rod with 2,4-diaminobutyric acid in the cell wall JO - Int J Syst Bacteriol VL - 46 UR - https://doi.org/10.1099/00207713-46-4-967 DO - 10.1099/00207713-46-4-967 ID - Takeuchi1996 ER - TY - JOUR AU - Martin, E. AU - Lodders, N. AU - Jackel, U. AU - Schuman, P. AU - Kampfer, P. PY - 2010 DA - 2010// TI - Leucobacter aerolatus sp. nov., from the air of a duck barn JO - Int J Syst Evol Microbiol VL - 60 UR - https://doi.org/10.1099/ijs.0.021303-0 DO - 10.1099/ijs.0.021303-0 ID - Martin2010 ER - TY - JOUR AU - Somvanshi, V. S. AU - Lang, E. AU - Schumann, P. AU - Pukall, R. AU - Kroppenstedt, R. M. AU - Ganguly, S. PY - 2007 DA - 2007// TI - Leucobacter iariussp. nov., in the family Microbacteriaceae JO - Int J Syst Evol Microbiol VL - 57 UR - https://doi.org/10.1099/ijs.0.64683-0 DO - 10.1099/ijs.0.64683-0 ID - Somvanshi2007 ER - TY - JOUR AU - Muir, R. E. AU - Tan, M. W. PY - 2007 DA - 2007// TI - Leucobacter chromiireducens subsp. solipictus subsp. nov., a pigmented bacterium isolated from the nematode Caenorhabditis elegans, and emended description of L. chromiireducens JO - Int J Syst Evol Microbiol VL - 57 UR - https://doi.org/10.1099/ijs.0.64822-0 DO - 10.1099/ijs.0.64822-0 ID - Muir2007 ER - TY - JOUR AU - Morais, P. V. AU - Paulo, C. AU - Francisco, R. AU - Branco, R. AU - Paula Chung, A. AU - Da Costa, M. S. PY - 2006 DA - 2006// TI - Leucobacter luti sp. nov., and Leucobacter alluvii sp. nov., two new species of the genus Leucobacter isolated under chromium stress JO - Syst Appl Microbiol VL - 29 UR - https://doi.org/10.1016/j.syapm.2005.10.005 DO - 10.1016/j.syapm.2005.10.005 ID - Morais2006 ER - TY - JOUR AU - Weon, H. Y. AU - Anandham, R. AU - Tamura, T. AU - Hamada, M. AU - Kim, S. J. AU - Kim, Y. S. PY - 2012 DA - 2012// TI - Leucobacter denitrificans sp. nov., isolated from cow dung JO - J Microbiol VL - 50 UR - https://doi.org/10.1007/s12275-012-1324-1 DO - 10.1007/s12275-012-1324-1 ID - Weon2012 ER - TY - JOUR AU - Ue, H. PY - 2011 DA - 2011// TI - Leucobacter exalbidus sp. nov., an actinobacterium isolated from a mixed culture from compost JO - J Gen Appl Microbiol VL - 57 UR - https://doi.org/10.2323/jgam.57.27 DO - 10.2323/jgam.57.27 ID - Ue2011 ER - TY - JOUR AU - Shin, N. R. AU - Kim, M. S. AU - Jung, M. J. AU - Roh, S. W. AU - Nam, Y. D. AU - Park, E. J. PY - 2011 DA - 2011// TI - Leucobacter celer sp. nov., isolated from Korean fermented seafood JO - Int J Syst Evol Microbiol VL - 61 UR - https://doi.org/10.1099/ijs.0.026211-0 DO - 10.1099/ijs.0.026211-0 ID - Shin2011 ER - TY - JOUR AU - Behrendt, U. AU - Ulrich, A. AU - Schuman, P. PY - 2008 DA - 2008// TI - Leucobacter tardus sp. nov., isolated from the phyllosphere of Solanum tuberosum L JO - Int J Syst Evol Microbiol VL - 58 UR - https://doi.org/10.1099/ijs.0.2008/001065-0 DO - 10.1099/ijs.0.2008/001065-0 ID - Behrendt2008 ER - TY - JOUR AU - Halpern, M. AU - Landsberg, O. AU - Raats, D. AU - Rosenberg, E. PY - 2007 DA - 2007// TI - Culturable and VBNC Vibrio cholerae: Interactions with Chironomid egg masses and their bacterial population JO - Microb Ecol VL - 53 UR - https://doi.org/10.1007/s00248-006-9094-0 DO - 10.1007/s00248-006-9094-0 ID - Halpern2007 ER - TY - JOUR AU - Broza, M. AU - Halpern, M. PY - 2001 DA - 2001// TI - Chironomid egg masses and Vibrio cholerae JO - Nature VL - 412 UR - https://doi.org/10.1038/35083691 DO - 10.1038/35083691 ID - Broza2001 ER - TY - JOUR AU - Halpern, M. AU - Broza, Y. B. AU - Mittler, S. AU - Arakawa, E. AU - Broza, M. PY - 2004 DA - 2004// TI - Chironomid egg masses as a natural reservoir of Vibrio cholerae non-O1 and non-O139 in freshwater habitats JO - Microb Ecol VL - 47 UR - https://doi.org/10.1007/s00248-003-2007-6 DO - 10.1007/s00248-003-2007-6 ID - Halpern2004 ER - TY - JOUR AU - Halpern, M. AU - Raats, D. AU - Lavion, R. AU - Mittler, S. PY - 2006 DA - 2006// TI - Dependent population dynamics between chironomids (non-biting midges) and Vibrio cholerae JO - FEMS Microbiol Ecol VL - 55 UR - https://doi.org/10.1111/j.1574-6941.2005.00020.x DO - 10.1111/j.1574-6941.2005.00020.x ID - Halpern2006 ER - TY - JOUR AU - Senderovich, Y. AU - Gershtein, Y. AU - Halewa, E. AU - Halpern, M. PY - 2008 DA - 2008// TI - Vibrio cholerae and Aeromonas; do they share a mutual host? JO - ISME J VL - 2 UR - https://doi.org/10.1038/ismej.2007.114 DO - 10.1038/ismej.2007.114 ID - Senderovich2008 ER - TY - JOUR AU - Figueras, M. J. AU - Beaz-Hidalgo, R. AU - Senderovich, Y. AU - Laviad, S. AU - Halpern, M. PY - 2011 DA - 2011// TI - Re-identification of Aeromonas isolates from chironomid egg masses as the potential pathogenic bacteria Aeromonas aquariorum JO - Environ Microbiol Rep VL - 3 UR - https://doi.org/10.1111/j.1758-2229.2010.00216.x DO - 10.1111/j.1758-2229.2010.00216.x ID - Figueras2011 ER - TY - JOUR AU - Beaz-Hidalgo, R. AU - Shakèd, T. AU - Laviad, S. AU - Halpern, M. AU - Figueras, M. PY - 2012 DA - 2012// TI - Chironomid egg masses harbour the clinical species Aeromonas taiwanensis and Aeromonas sanarellii JO - FEMS Microbiol Lett VL - 337 UR - https://doi.org/10.1111/1574-6968.12003 DO - 10.1111/1574-6968.12003 ID - Beaz-Hidalgo2012 ER - TY - JOUR AU - Senderovich, Y. AU - Halpern, M. PY - 2013 DA - 2013// TI - The protective role of endogenous bacterial communities in chironomid egg masses and larvae JO - ISME J VL - 7 UR - https://doi.org/10.1038/ismej.2013.100 DO - 10.1038/ismej.2013.100 ID - Senderovich2013 ER - TY - JOUR AU - Klenk, H. P. AU - Göker, M. PY - 2010 DA - 2010// TI - En route to a genome-based classification of Archaea and Bacteria? JO - Syst Appl Microbiol VL - 33 UR - https://doi.org/10.1016/j.syapm.2010.03.003 DO - 10.1016/j.syapm.2010.03.003 ID - Klenk2010 ER - TY - JOUR AU - Göker, M. AU - Klenk, H. P. PY - 2013 DA - 2013// TI - Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects JO - Stand Genomic Sci VL - 8 UR - https://doi.org/10.4056/sigs.3446951 DO - 10.4056/sigs.3446951 ID - Göker2013 ER - TY - JOUR AU - Wu, D. AU - Hugenholtz, P. AU - Mavromatis, K. AU - Pukall, R. AU - Dalin, E. AU - Ivanova, N. N. PY - 2009 DA - 2009// TI - A phylogeny-driven Genomic Encyclopaedia of Bacteria and Archaea JO - Nature VL - 462 UR - https://doi.org/10.1038/nature08656 DO - 10.1038/nature08656 ID - Wu2009 ER - TY - JOUR AU - Kyrpides, N. C. AU - Woyke, T. AU - Eisen, J. A. AU - Garrity, G. AU - Lilburn, T. G. AU - Beck, B. J. PY - 2013 DA - 2013// TI - Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project JO - Stand Genomic Sci VL - 9 UR - https://doi.org/10.4056/sigs.5068949 DO - 10.4056/sigs.5068949 ID - Kyrpides2013 ER - TY - JOUR AU - Kyrpides, N. C. AU - Hugenholtz, P. AU - Eisen, J. A. AU - Woyke, T. AU - Göker, M. AU - Parker, C. T. PY - 2014 DA - 2014// TI - Genomic encyclopedia of Bacteria and Archaea: sequencing a myriad of type strains JO - PLoS Biol VL - 8 UR - https://doi.org/10.1371/journal.pbio.1001920 DO - 10.1371/journal.pbio.1001920 ID - Kyrpides2014 ER - TY - JOUR AU - Piao, H. AU - Froula, J. AU - Du, C. AU - Kim, T. W. AU - Hawley, E. AU - Bauer, S. PY - 2014 DA - 2014// TI - Identification of novel biomass-degrading enzymes from microbial dark matter: populating genome sequence space with functional annotation JO - Biotechnol Bioeng VL - 111 UR - https://doi.org/10.1002/bit.25250 DO - 10.1002/bit.25250 ID - Piao2014 ER - TY - STD TI - Reddy TB, Thomas AD, Stamatis D, Bertsch J, Isbandi M, Jansson J, et al. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta) genome project classification. Nucleic Acids Res 2015;43:D1099-106. ID - ref25 ER - TY - STD TI - DOE Joint Genome Institute. http://www.jgi.doe.gov UR - http://www.jgi.doe.gov ID - ref26 ER - TY - JOUR AU - Mavromatis, K. AU - Land, M. L. AU - Brettin, T. S. AU - Quest, D. J. AU - Copeland, A. AU - Clum, A. PY - 2012 DA - 2012// TI - The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0048837 DO - 10.1371/journal.pone.0048837 ID - Mavromatis2012 ER - TY - STD TI - List of growth media used at the DSMZ. [http://www.dsmz.de/catalogues/catalogue-microorganisms/culture-technology/list-of-media-for-microorganisms.html] UR - http://www.dsmz.de/catalogues/catalogue-microorganisms/culture-technology/list-of-media-for-microorganisms.html ID - ref28 ER - TY - JOUR AU - Gemeinholzer, B. AU - Dröge, G. AU - Zetzsche, H. AU - Haszprunar, G. AU - Klenk, H. P. AU - Güntsch, A. M. PY - 2011 DA - 2011// TI - The DNA Bank Network: the start from a German initiative JO - Biopreserv Biobank VL - 9 UR - https://doi.org/10.1089/bio.2010.0029 DO - 10.1089/bio.2010.0029 ID - Gemeinholzer2011 ER - TY - JOUR AU - Bennett, S. PY - 2004 DA - 2004// TI - Solexa Ltd JO - Pharmacogenomics VL - 5 UR - https://doi.org/10.1517/14622416.5.4.433 DO - 10.1517/14622416.5.4.433 ID - Bennett2004 ER - TY - JOUR AU - Zerbino, D. AU - Birney, E. PY - 2008 DA - 2008// TI - Velvet: algorithms for de novo short read assembly using de Bruijn graphs JO - Genome Res VL - 18 UR - https://doi.org/10.1101/gr.074492.107 DO - 10.1101/gr.074492.107 ID - Zerbino2008 ER - TY - STD TI - Wgsim. https://github.com/lh3/wgsim UR - https://github.com/lh3/wgsim ID - ref32 ER - TY - JOUR AU - Gnerre, S. AU - MacCallum, I. PY - 2011 DA - 2011// TI - High–quality draft assemblies of mammalian genomes from massively parallel sequence data JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1017351108 DO - 10.1073/pnas.1017351108 ID - Gnerre2011 ER - TY - JOUR AU - Hyatt, D. AU - Chen, G. L. AU - Locascio, P. F. AU - Land, M. L. AU - Larimer, F. W. AU - Hauser, L. J. PY - 2010 DA - 2010// TI - Prodigal: Prokaryotic gene recognition and translation initiation site identification JO - BMC Bioinformatics VL - 11 UR - https://doi.org/10.1186/1471-2105-11-119 DO - 10.1186/1471-2105-11-119 ID - Hyatt2010 ER - TY - JOUR AU - Mavromatis, K. AU - Ivanova, N. N. AU - Chen, I. M. AU - Szeto, E. AU - Markowitz, V. M. AU - Kyrpides, N. C. PY - 2009 DA - 2009// TI - The DOE-JGI Standard operating procedure for the annotations of microbial genomes JO - Stand Genomic Sci VL - 1 UR - https://doi.org/10.4056/sigs.632 DO - 10.4056/sigs.632 ID - Mavromatis2009 ER - TY - JOUR AU - Chen, I. M. AU - Markowitz, V. M. AU - Chu, K. AU - Anderson, I. AU - Mavromatis, K. AU - Kyrpides, N. C. PY - 2013 DA - 2013// TI - Improving microbial genome annotations in an integrated database context JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0054859 DO - 10.1371/journal.pone.0054859 ID - Chen2013 ER - TY - JOUR AU - Markowitz, V. M. AU - Mavromatis, K. AU - Ivanova, N. N. AU - Chen, I. M. AU - Chu, K. AU - Kyrpides, N. C. PY - 2009 DA - 2009// TI - IMG ER: a system for microbial genome annotation expert review and curation JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp393 DO - 10.1093/bioinformatics/btp393 ID - Markowitz2009 ER - TY - JOUR AU - Senderovich, Y. AU - Halpern, M. PY - 2012 DA - 2012// TI - Bacterial community composition associated with chironomid egg masses JO - J Insect Sci VL - 12 UR - https://doi.org/10.1673/031.012.14901 DO - 10.1673/031.012.14901 ID - Senderovich2012 ER - TY - JOUR AU - Yun, J. -. H. AU - Cho, Y. -. J. AU - Chun, J. AU - Hyun, D. -. W. AU - Bae, J. -. W. PY - 2014 DA - 2014// TI - Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8T JO - Stand Genomic Sci VL - 9 UR - https://doi.org/10.4056/sigs.4708537 DO - 10.4056/sigs.4708537 ID - Yun2014 ER - TY - JOUR AU - Sturm, G. AU - Buchta, K. AU - Kurz, T. AU - Rensing, S. A. AU - Gescher, J. PY - 2012 DA - 2012// TI - Draft genome sequence of Leucobacter chromiiresistens, an extremely chromium-tolerant strain JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.06413-11 DO - 10.1128/JB.06413-11 ID - Sturm2012 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods JO - Mol Biol Evol VL - 10 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - JOUR AU - Field, D. AU - Garrity, G. M. AU - Gray, T. AU - Morrison, N. AU - Selengut, J. AU - Sterk, P. PY - 2008 DA - 2008// TI - The minimum information about a genome sequence (MIGS) specification JO - Nat Biotechnol VL - 26 UR - https://doi.org/10.1038/nbt1360 DO - 10.1038/nbt1360 ID - Field2008 ER - TY - JOUR AU - Field, D. AU - Amaral-Zettler, L. AU - Cochrane, G. AU - Cole, J. R. AU - Dawyndt, P. AU - Garrity, G. M. PY - 2011 DA - 2011// TI - The Genomic Standards Consortium JO - PLoS Biol VL - 9 UR - https://doi.org/10.1371/journal.pbio.1001088 DO - 10.1371/journal.pbio.1001088 ID - Field2011 ER - TY - JOUR AU - Garrity, G. M. PY - 2010 DA - 2010// TI - Names for Life Browser Tool takes expertise out of the database and puts it right in the browser JO - Microbiol Today VL - 37 ID - Garrity2010 ER - TY - JOUR AU - Woese, C. R. AU - Kandler, O. AU - Weelis, M. L. PY - 1990 DA - 1990// TI - Towards a natural system of organisms. Proposal for the domains Archaea and Bacteria JO - Proc Natl Acad Sci U S A VL - 87 UR - https://doi.org/10.1073/pnas.87.12.4576 DO - 10.1073/pnas.87.12.4576 ID - Woese1990 ER - TY - CHAP AU - Garrity, G. M. AU - Holt, J. G. ED - Garrity, G. M. ED - Boone, D. R. ED - Castenholz, R. W. PY - 2001 DA - 2001// TI - The Road Map to the Manual BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-21609-6_15 DO - 10.1007/978-0-387-21609-6_15 ID - Garrity2001 ER - TY - JOUR AU - Stackebrandt, E. R. F. AU - Ward-Rainey, N. L. PY - 1997 DA - 1997// TI - Proposal for a new hierarchic classification system, Actinobacteria classis nov JO - Int J Syst Bacteriol VL - 47 UR - https://doi.org/10.1099/00207713-47-2-479 DO - 10.1099/00207713-47-2-479 ID - Stackebrandt1997 ER - TY - JOUR AU - Zhi, X. Y. AU - Li, W. J. AU - Stackebrandt, E. PY - 2009 DA - 2009// TI - An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa JO - Int J Syst Evol Microbiol VL - 59 UR - https://doi.org/10.1099/ijs.0.65780-0 DO - 10.1099/ijs.0.65780-0 ID - Zhi2009 ER - TY - JOUR AU - Skerman, V. B. D. AU - McGowan, V. AU - Sneath, P. H. A. PY - 1980 DA - 1980// TI - Approved Lists of Bacterial Names JO - Int J Syst Bacteriol VL - 30 UR - https://doi.org/10.1099/00207713-30-1-225 DO - 10.1099/00207713-30-1-225 ID - Skerman1980 ER - TY - JOUR AU - Buchanan, R. E. PY - 1917 DA - 1917// TI - Studies in the nomenclature and classification of bacteria. II. The primary subdivisions of the Schizomycetes JO - J Bacteriol VL - 2 ID - Buchanan1917 ER - TY - JOUR PY - 1995 DA - 1995// TI - Validation of the publication of new names and new combinations previously effectively pub-lished outside the IJSB. List No. 53 JO - Int J Syst Bacteriol VL - 45 UR - https://doi.org/10.1099/00207713-45-2-418 DO - 10.1099/00207713-45-2-418 ID - ref51 ER - TY - JOUR AU - Park, Y. H. AU - Suzuki, K. AU - Yim, D. G. AU - Lee, K. C. AU - Kim, E. AU - Yoon, J. PY - 1993 DA - 1993// TI - Suprageneric classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA JO - Antonie Van Leeuwenhoek VL - 64 UR - https://doi.org/10.1007/BF00873089 DO - 10.1007/BF00873089 ID - Park1993 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology JO - Gene Ontology Consortium Nat Genet VL - 25 ID - Ashburner2000 ER - TY - JOUR AU - Holland-Moritz, H. E. AU - Bevans, D. R. AU - Lang, J. M. AU - Darling, A. E. AU - Eisen, J. A. AU - Coil, D. A. PY - 2013 DA - 2013// TI - Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria) JO - Genome Announc VL - 1 UR - https://doi.org/10.1128/genomeA.00325-13 DO - 10.1128/genomeA.00325-13 ID - Holland-Moritz2013 ER -