Skip to main content

Table 5 M2B3 Reporting Standard about environmental measurements

From: Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards

Interest

Measurement

Description of usage

Control vocabulary/format/unit

 

General

Conductivity

Electrical conductivity of water

SDN:P02:75:CNDC

SDN:P06:46:UECA for mS/cm

Temperature

Temperature of water

SDN:P02:75:TEMP

SDN:P06:46:UPAA for °C

Depth (m)

Vertical spatial coordinates

SDN:P02:75:AHGT

SDN:P06:46:ULAA for m

Salinity

Salinity of water

SDN:P02:75:PSAL

SDN:P06:46:UGKG for PSU

Fluorescence

Raw (volts) or converted (mg Chla/m^3) fluorescence of the water

SDN:P02:75:FVLT

SDN:P06:46:UVLT for volts

Nutrient status of a system

Nitrate

Nitrate concentration parameters in the water column

SDN:P02:75:NTRA

SDN:P06:46:UPOX for μmol/L

Nitrite

Nitrite concentration parameters in the water column

SDN:P02:75:NTRI

SDN:P06:46:UPOX for μmol/L

Phosphate

Phosphate concentration parameters in the water column

SDN:P02:75:PHOS

SDN:P06:46:UPOX for μmol/L

Silicate

Silicate concentration parameters in the water column

SDN:P02:75:SLCA

SDN:P06:46:UPOX for μmol/L

Ammonium

Ammonium concentration parameters in the water column

SDN:P02:75:AMON

SDN:P06:46:UPOX for μmol/L

Chemical properties of a system

pH

Alkalinity, acidity and pH of the water column

SDN:P02:75:ALKY

Dissolved oxygen concentration

Dissolved oxygen parameters in the water column

SDN:P02:75:DOXY

SDN:P06:46:KGUM for μmol/kg

Optical properties of a system

Downward PAR

Visible waveband radiance and irradiance measurements in the water column

SDN:P02:75:VSRW

SDN:P06:46:UMES for μE/m^2/s

Turbidity

Transmittance and attenuance of the water column

SDN:P02:75:ATTN

SDN:P06:46:USTU for FTU or NTU

Biogeochemistry (Amount or Mass)

Carbon organic particulate (POC)

Particulate organic carbon concentration in the water column

SDN:P02:75:CORG

SDN:P06:46:UGPL for μg/L

Nitrogen organic particulate (PON)

Particulate organic nitrogen concentration in the water column

SDN:P02:75:NTOT

SDN:P06:46:UGPL for μg/L

Carbon organic dissolved (DOC)

Dissolved organic carbon concentration in the water column

SDN:P02:75:DOCC

SDN:P06:46:UPOX for μmol/L

Nitrogen organic dissolved (DON)

Dissolved organic nitrogen concentration in the water column

SDN:P02:75:TDNT

SDN:P06:46:UMGL for mg/L

Ecosystem trophic structure & biodiversity (Amount, Volume or Mass of organisms in the environment)

Pigment concentrations

Concentration of pigments (e.g. chlorophyll a) extracted and analysed by fluorometry or HPLC

SDN:P02:75:CPWC

SDN:P06:46:UMMC for mg/m^3

Picoplankton (Flow Cytometry)

Abundance of cells in the water column (+other avail. cell properties)

SDN:P02:75:BATX

SDN:P06:46:UPMM for #/m^3

Nano/Microplankton

Abundance of cells in the water column (+other avail. cell properties)

SDN:P02:75:MATX or PATX

SDN:P06:46:UPMM for #/m^3

Meso/Macroplankton

Abundance of individuals in the water column (+other avail. properties)

SDN:P02:75:ZATX

SDN:P06:46:UPMM for #/m^3

Ecosystem trophic rates

Primary Production (isotope uptake)

Primary Production in the water column

SDN:P02:75:PPRD

SDN:P06:46:UGDC for mg/m^3/d

Primary Production (oxygen)

Primary Production in the water column

SDN:P02:75:PPRD

SDN:P06:46:UGDC for mg/m^3/d

Bacterial production (isotope uptake)

Bacterial production in the water column

SDN:P02:75:UPTH

SDN:P06:46:UGDC for mg/m^3/d

Bacterial production (respiration)

Bacterial production in the water column

SDN:P02:75:UPTH

SDN:P06:46:UGDC for mg/m^3/d

  1. Mandatory information is in bold and other fields are recommended.