Table 6 Number of genes associated with the 25 general COG functional categories
From: Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov
Code | Value | % age a | Description |
|---|---|---|---|
J | 154 | 4.46 | Translation |
A | 0 | 0 | RNA processing and modification |
K | 296 | 8.57 | Transcription |
L | 138 | 4 | Replication, recombination and repair |
B | 1 | 0.03 | Chromatin structure and dynamics |
D | 24 | 0.7 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0 | Nuclear structure |
V | 73 | 2.11 | Defense mechanisms |
T | 156 | 4.52 | Signal transduction mechanisms |
M | 116 | 3.36 | Cell wall/membrane biogenesis |
N | 62 | 1.8 | Cell motility |
Z | 0 | 0 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 48 | 1.4 | Intracellular trafficking and secretion |
O | 66 | 1.91 | Posttranslational modification, protein turnover, chaperones |
C | 153 | 4.43 | Energy production and conversion |
G | 237 | 6.86 | Carbohydrate transport and metabolism |
E | 328 | 9.5 | Amino acid transport and metabolism |
F | 56 | 1.62 | Nucleotide transport and metabolism |
H | 92 | 2.66 | Coenzyme transport and metabolism |
I | 85 | 2.46 | Lipid transport and metabolism |
P | 164 | 4.75 | Inorganic ion transport and metabolism |
Q | 53 | 1.53 | Secondary metabolites biosynthesis, transport and catabolism |
R | 346 | 10.02 | General function prediction only |
S | 195 | 5.65 | Function unknown |
- | 948 | 27.46 | Not in COGs |