Table 4 Number of genes associated with the 25 general COG functional categories
From: Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12
Code | Value | % of total a | Description |
|---|---|---|---|
J | 1 | 1.16 | Translation |
A | 0 | 0 | RNA processing and modification |
K | 1 | 1.16 | Transcription |
L | 3 | 3.49 | Replication, recombination and repair |
B | 0 | 0 | Chromatin structure and dynamics |
D | 1 | 1.16 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0 | Nuclear structure |
V | 0 | 0 | Defense mechanisms |
T | 0 | 0 | Signal transduction mechanisms |
M | 0 | 0 | Cell wall/membrane biogenesis |
N | 0 | 0 | Cell motility |
Z | 0 | 0 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 0 | 0 | Intracellular trafficking and secretion |
O | 1 | 1.16 | Posttranslational modification, protein turnover, chaperones |
C | 0 | 0 | Energy production and conversion |
G | 0 | 0 | Carbohydrate transport and metabolism |
E | 0 | 0 | Amino acid transport and metabolism |
F | 2 | 2.33 | Nucleotide transport and metabolism |
H | 1 | 1.16 | Coenzyme transport and metabolism |
I | 0 | 0 | Lipid transport and metabolism |
P | 0 | 0 | Inorganic ion transport and metabolism |
Q | 0 | 0 | Secondary metabolites biosynthesis, transport and catabolism |
R | 4 | 4.65 | General function prediction only |
S | 2 | 2.33 | Function unknown |
- | 72 | 83.72 | Not in COGs |