Table 4 Number of protein coding genes of Mesorhizobium loti R88B associated with the general COG functional categories
From: Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B
Code | Value | % age | COG category |
|---|---|---|---|
J | 202 | 3.29 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.02 | RNA processing and modification |
K | 572 | 9.32 | Transcription |
L | 181 | 2.95 | Replication, recombination and repair |
B | 5 | 0.08 | Chromatin structure and dynamics |
D | 33 | 0.54 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.00 | Nuclear structure |
V | 63 | 1.03 | Defense mechanisms |
T | 238 | 3.88 | Signal transduction mechanisms |
M | 330 | 5.38 | Cell wall/membrane biogenesis |
N | 43 | 0.70 | Cell motility |
Z | 1 | 0.02 | Cytoskeleton |
W | 1 | 0.02 | Extracellular structures |
U | 122 | 1.99 | Intracellular trafficking and secretion |
O | 188 | 3.06 | Posttranslational modification, protein turnover, chaperones |
C | 338 | 5.51 | Energy production conversion |
G | 567 | 9.24 | Carbohydrate transport and metabolism |
E | 751 | 12.24 | Amino acid transport metabolism |
F | 90 | 1.47 | Nucleotide transport and metabolism |
H | 230 | 3.75 | Coenzyme transport and metabolism |
I | 257 | 4.19 | Lipid transport and metabolism |
P | 272 | 4.43 | Inorganic ion transport and metabolism |
Q | 204 | 3.32 | Secondary metabolite biosynthesis, transport and catabolism |
R | 830 | 13.52 | General function prediction only |
S | 619 | 10.08 | Function unknown |
- | 1,505 | 21.45 | Not in COGS |