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Table 1 Classification and general features of O. rhinotracheale strain ORT-UMN 88 in accordance with the MIGS recommendations [17]

From: Complete genome sequence of Ornithobacterium rhinotracheale strain ORT-UMN 88

MIGS ID

Property

Term

Evidence codea

 

Current classification

Domain “Bacteria”

TAS [18, 19]

  

Phylum “Bacteroidetes”

TAS [20, 21]

  

Class “Flavobacteriia”

TAS [22, 23]

  

Order Flavobacteriales

TAS [24, 25]

  

Family Flavobacteriaceae

TAS [15, 26, 27]

  

Genus Ornithobacterium

TAS [28, 29]

  

Species rhinotracheale

TAS [28, 29]

MIGS-7

Subspecific genetic lineage (strain)

Strain ORT-UMN 88

TAS [13]

  

Serotype A

TAS [13]

 

Gram stain

Negative

TAS [1, 4]

 

Cell shape

Pleomorphic rod

TAS [1, 4]

 

Motility

Nonmotile

TAS [1, 4]

 

Sporulation

Non-sporulating

TAS [1, 4]

 

Temperature range

Mesophile (30°C-42°C)

TAS [1, 4]

 

Optimum temperature

37°C

TAS [1, 4]

MIGS-6.2

pH range; Optimum

7.2-7.6 (BHI); 7.4

TAS [1], IDA

 

Carbon source

Saccharolytic (glucose)

TAS [4]

MIGS-6

Habitat

Respiratory tract of birds worldwide

TAS [1, 4]

MIGS-6.3

Salinity

Growth in BHI broth, (0.75% salts)

TAS [1], IDA

MIGS-22

Oxygen requirement

Microaerophilic, anaerobic, or aerobic

TAS [1, 4]

 

Energy metabolism

Chemoorganotroph

TAS [4]

MIGS-15

Biotic relationship

Parasitic

TAS [4]

MIGS-14

Pathogenicity

Pneumonia, airsacculitis, tracheitis, pericarditis

TAS [1, 12]

MIGS-16

Specific host

Poultry

TAS [1, 4, 12]

MIGS-18

Health status of host

Symptomatic

TAS [12, 13]

 

Biosafety level

2 t

TAS [30]

MIGS-19

Trophic level

Chemoheterotroph

TAS [4]

MIGS-23.1

Isolation

Pneumonic turkey lung

TAS [12, 13]

MIGS-4

Geographic location

Minnesota, USA

TAS [12, 13]

MIGS-5

Time of sample collection

1995

TAS [12]

MIGS-4.1

Latitude

Not reported

 

MIGS-4.2

Longitude

Not reported

 

MIGS-4.3

Depth

Not reported

 

MIGS-4.4

Altitude

Not reported

 
  1. aEvidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). Evidence codes are from the Gene Ontology project [31].