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Table 4 Number of genes associated with the 25 general COG functional categories

From: High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

Code

Value

% of total a

Description

J

167

4.17

Translation

A

1

0.02

RNA processing and modification

K

134

3.35

Transcription

L

105

2.62

Replication, recombination and repair

B

1

0.02

Chromatin structure and dynamics

D

27

0.67

Cell cycle control, mitosis and meiosis

Y

0

0.00

Nuclear structure

V

60

1.50

Defense mechanisms

T

94

2.35

Signal transduction mechanisms

M

229

5.72

Cell wall/membrane biogenesis

N

11

0.27

Cell motility

Z

0

0.00

Cytoskeleton

W

0

0.00

Extracellular structures

U

30

0.75

Intracellular trafficking and secretion

O

94

2.35

Posttranslational modification, protein turnover, chaperones

C

153

3.82

Energy production and conversion

G

126

3.15

Carbohydrate transport and metabolism

E

203

5.07

Amino acid transport and metabolism

F

65

1.62

Nucleotide transport and metabolism

H

99

2.47

Coenzyme transport and metabolism

I

96

2.40

Lipid transport and metabolism

P

149

3.72

Inorganic ion transport and metabolism

Q

69

1.72

Secondary metabolites biosynthesis, transport and catabolism

R

328

8.19

General function prediction only

S

229

5.72

Function unknown

-

1790

44.72

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome.