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Table 4 Number of genes associated with general COG functional categories

From: Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat

Code

Value

% of total*

Description

J

137

6.44

Translation, ribosomal structure and biogenesis

A

0

0.00

RNA processing and modification

K

124

5.83

Transcription

L

119

5.59

Replication, recombination and repair

B

1

0.05

Chromatin structure and dynamics

D

20

0.94

Cell cycle control, mitosis and meiosis

V

41

1.93

Defense mechanisms

T

156

7.33

Signal transduction mechanisms

M

97

4.56

Cell wall/membrane biogenesis

N

74

3.48

Cell motility

U

42

1.97

Intracellular trafficking and secretion

O

81

3.81

Posttranslational modification, protein turnover, chaperones

C

135

6.35

Energy production and conversion

G

179

8.42

Carbohydrate transport and metabolism

E

196

9.21

Amino acid transport and metabolism

F

65

3.06

Nucleotide transport and metabolism

H

72

3.39

Coenzyme transport and metabolism

I

71

3.34

Lipid transport and metabolism

P

141

6.63

Inorganic ion transport and metabolism

Q

24

1.13

Secondary metabolites biosynthesis, transport and catabolism

R

234

11.00

General function prediction only

S

118

5.55

Function unknown

-

1586

45.31

Not in COGs

  1. *The total is based on the total number of protein-coding genes in the genome.