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Table 3 Genome statistics

From: Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat

Attribute

Value

% of Total*

Genome Size (bp)

3,782,798

100.00

DNA coding (bp)

3,435,593

90.82

DNA G + C (bp)

1,961,772

51.86

DNA scaffolds

1

100.00

Total genes

3500

100.00

Protein coding genes

3450

98.57

RNA genes

50

1.43

Pseudo genes

53

1.51

Genes with function prediction

1990

56.86

Genes in paralog clusters

2366

67.60

Genes assigned to COGs

1914

54.69

Genes with Pfam domains

2487

71.06

Genes with signal peptides

146

4.17

Genes with transmembrane helices

857

24.49

CRISPR repeats

0

 
  1. *The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.