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Table 3 Nucleotide content and gene count levels of the genome

From: Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418T

Attribute

Genome (total)

 

Value

% of total

Genome size (bp)

2,715,909

100.00%

DNA coding (bp)

2,336,075

86.01%

G+C content (bp)

889,460

32.75%

DNA scaffolds

1

 

Total genes

2397

100.00%

Protein-coding genes

2,329

97.00%

RNA genes

68

2.84%

Pseudo genes

24

1.00%

Genes in internal clusters

N/Da

 

Genes with function prediction

1881

78.47%

Genes assigned to COGs

1,438

60.00%

Genes assigned Pfam domains

1,933

80.64%

Genes with signal peptides

236

9.85%

Genes with transmembrane helices

506

21.11%

Number of CRISPR candidates

8

 

Confirmed CRISPR(s)

1

 

Unconfirmed CRISPR(s)

7

 
  1. aN/D = not determined.