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Table 1 Summary of genomes and their corresponding scaffolds contaminated with PhiX sequences

From: Large-scale contamination of microbial isolate genomes by Illumina PhiX control

Number of Genomes

Number of contaminated scaffolds/genome

Average contaminated sequence length (bp)/ scaffold

Average contaminated sequence length (bp)/ genome

2

10

406

4055

5

9

476

4282

6

8

502

4017

3

7

627

4389

46

2–6

1878

4777

979

1

5587

5587