Skip to main content

Table 3 Nucleotide content and gene count levels of the genome

From: Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S

Attribute

Genome (total)

 

Value

% of total a

Genome size (bp)

5,666,696

99.14b)

DNA Coding

4,904,707

86.55

DNA G + C (bp)

2,679,309

47.3

DNA scaffolds

24

100

Total genes

5,494

100

Protein-coding genes

5,417

98.47

RNA genes

80

1.42

Pseudogenes

not determined

not determined

Genes in internal clusters

not determined

not determined

Genes with function prediction

4561

83.02

Genes assigned to COGs

3,210

58.26

Genes with Pfam domains

4387

79.85

Genes with signal peptides

296

5.46

Genes with transmembrane helices

1,624

29.98

CRISPR repeats

143

 
  1. a)The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.
  2. b)Percent value of the draft genome sequence compared to the calculated size of the complete genome sequence.