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Table 4 Number of genes associated with general COG functional categories

From: Draft genome sequence of Mesotoga strain PhosAC3, a mesophilic member of the bacterial order Thermotogales, isolated from a digestor treating phosphogypsum in Tunisia

Code Value % age Description
J 133 7.01 Translation, ribosomal structure and biogenesis
A 1 0.03 RNA processing and modification
K 102 5.37 Transcription
L 114 6.01 Replication, recombination and repair
B 2 0.07 Chromatin structure and dynamics
D 15 0.79 Cell cycle control, cell division, chromosome partitioning
V 39 2.05 Defense mechanisms
T 52 2.74 Signal transduction mechanisms
M 92 4.85 Cell wall/membrane/envelope biogenesis
N 6 0.32 Cell motility*
U 20 1.05 Intracellular trafficking, secretion, and vesicular
C 117 6.16 Energy production and conversion
G 243 12.80 Carbohydrate transport and metabolism
E 229 12.07 Amino acid transport and metabolism
F 57 3 Nucleotide transport and metabolism
H 48 2.53 Coenzyme transport and metabolism
I 43 2.27 Lipid transport and metabolism
P 119 6.27 Inorganic ion transport and metabolism
Q 22 1.16 Secondary metabolites biosynthesis, transport and catabolism
R 254 12.91 General function prediction only
S 141 7.43 Function unknown
J 133 7.01 Translation, ribosomal structure and biogenesis
- 1365 43.71 Not in COG
  1. The total is based on the total number of protein coding genes in the annotated genome. *Cell motility COG categories may also includes genes involved in secretion systems such as TSS2. This can explain the occurrence of genes of this category in the genome of strain PhosAc3 whilst this bacterium is non-motile.