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Table 1 Main functional categories and signal counts in GeoChip microarray

From: Niche–dependent sponge hologenome expression profiles and the host-microbes interplay: a case of the hawaiian demosponge Mycale Grandis

Bacterial category

SAC (8.85 ± 0.03)

SCC (9.36 ± 0.12)**

SDC (8.93 ± 0.02)*

Alga (9.42)

Coral (9.41)

Carbon cycling

     

Acetogenesis

109.33 ± 5.13

176.33 ± 17.47

114 ± 0

155

159

Carbon degradation

2559.66 ± 46.3

4038.66 ± 449.05

2734.66 ± 63.21

3785

3583

Cellulose

231.66 ± 9.6

385 ± 39.23

245.66 ± 1.52

324

340

Chitin

503.66 ± 21.12

895.66 ± 88.11

529 ± 15.39

747

780

Hemicellulose

214.33 ± 5.13

347 ± 44.5

221.66 ± 6.42

317

307

Lignin

39.33 ± 2.08

60.66 ± 8.38

34.66 ± 0.57

56

57

Pectin

22 ± 0

23.33 ± 0.57

22 ± 0

3

2

Starch

1275.66 ± 36.29

1875.66 ± 214.64

1396.66 ± 29.73

1895

1662

Carbon fixation

280 ± 5.56

491.33 ± 49.81

291.33 ± 10.06

437

443

Methane

31.33 ± 3.05

42.33 ± 8.08

33 ± 1

38

43

Nitrogen

     

Ammonification

181.33 ± 6.02

283 ± 41.58

193 ± 6.24

249

272

Anammox

NA

1.66 ± 0.57

NA

2

2

Assimilatory N reduction

58.33 ± 2.08

104 ± 14.73

58.66 ± 0.57

88

94

Denitrification

275.66 ± 13.2

529.66 ± 58.85

296.33 ± 6.8

430

492

Dissimilatory N reduction

69 ± 2.64

111.66 ± 10.4

70 ± 3

90

102

Nitrification

124 ± 6.55

197 ± 23.38

135 ± 1.73

180

185

Nitrogen fixation

163.66 ± 4.5

243.66 ± 29.26

179.33 ± 4.5

239

228

Organic remediation

     

Aromatics

429 ± 18.52

970.66 ± 142.69

476 ± 13.45

805

807

Chlorinated solvents

30 ± 1

68.66 ± 11.01

34.66 ± 1.52

55

55

Herbicides

46.33 ± 2.51

111.33 ± 17.95

48.66 ± 0.57

74

85

Other Hydrocarbons

31.66 ± 2.51

72.66 ± 8.38

31 ± 2

57

61

Pesticides

23 ± 1.73

41.66 ± 8.38

21.66 ± 0.57

40

35

Phosphorus

359.33 ± 18.71

638 ± 69.31

383.66 ± 9.45

505

587

Stress

     

Cold shock

2 ± 0

5.33 ± 2.88

2 ± 0

4

4

Glucose limitation

3 ± 0

6.66 ± 0.57

3 ± 0

5

5

Heat shock

45 ± 2

88.66 ± 15.3

54 ± 2

71

83

Nitrogen limitation

33.33 ± 2.08

81 ± 14.79

41.66 ± 2.08

69

68

Osmotic stress

11.66 ± 1.52

29 ± 2.64

15 ± 1

25

25

Oxygen limitation

36.66 ± 0.57

73.33 ± 12.42

40.33 ± 2.88

69

63

Oxygen stress

104.33 ± 5.85

257 ± 55.43

129.66 ± 0.57

194

203

Phosphate limitation

121 ± 2.64

259.33 ± 52.44

150.66 ± 3.51

194

217

Protein stress

15.66 ± 0.57

29.66 ± 3.21

17 ± 0

24

23

Radiation stress

31 ± 0

64.66 ± 10.21

35.33 ± 2.88

46

52

σ-factors

103.66 ± 5.13

254 ± 34.87

116 ± 5.29

196

207

Sulphur

     

Adenylylsulfate reductase

36.66 ± 0.57

77.33 ± 5.03

39.66 ± 2.08

61

66

Sulfite reductase

297.66 ± 5.77

514 ± 63.23

315.33 ± 8.02

446

442

Sulphur oxidation

114 ± 5.56

183.33 ± 24.58

118.66 ± 5.85

152

179

Fungal category

SAC

(5.3 ± 0.04)

SCC

(6.06 ± 0.11)**

SDC

(5.39 ± 0.02)

Alga

(6.93)

Coral

(6.81)

Carbon degradation

     

α-galactoside

3.33 ± 0.57

5.33 ± 2.88

5 ± 1.73

9

14

Cellulose

24 ± 1

47 ± 9.64

19.33 ± 1.15

102

99

Chitin

16.33 ± 2.88

29.33 ± 5.68

12.33 ± 0.57

75

62

Cuitin

1 ± 0

4.66 ± 2.3

2 ± 0

7

2

Glucan

3.33 ± 0.57

6.33 ± 0.57

1 ± 0

18

15

Hemicellulose

8 ± 0

27.33 ± 4.72

13 ± 1

53

59

Inulin

NA

1 ± 0

2 ± 0

2

3

Lignin

49.33 ± 3.51

111.33 ± 21.96

65.66 ± 3.05

242

227

Pectin

1 ± 0

4.33 ± 0.57

1.66 ± 0.57

10

9

Polygalacturonate

6.66 ± 0.57

19.33 ± 2.88

8 ± 1

36

27

Starch

15.33 ± 1.52

28 ± 3.46

16 ± 1

64

56

Chitin synthesis

17 ± 1

24.33 ± 3.05

21 ± 1.73

60

56

Iron

     

Iron transport

2.33 ± 0.57

5.33 ± 0.57

2 ± 0

10

7

Iron uptake

5 ± 1

16.33 ± 2.88

6.66 ± 0.57

33

39

Siderophore transporter

1 ± 0

3.66 ± 0.57

1 ± 0

8

7

Siderophore synthesis

1.66 ± 0.57

1 ± 0

1 ± 0

5

5

Nitrogen

     

Ammonification

1.33 ± 0.57

3.33 ± 0.57

2.66 ± 0.57

9

7

Denitrification

4.66 ± 1.15

9.66 ± 2.3

3 ± 0

20

16

Organic Remediation

     

Aromatics

51.66 ± 2.3

111 ± 22.6

58.66 ± 1.15

216

208

Phosphorous

     

Phosphorus utilization

6.33 ± 0.57

11 ± 2

5.33 ± 0.57

25

22

Stress

     

Heat shock

1 ± 0

4 ± 1.73

1.66 ± 0.57

13

6

Nitrogen limitation

1.66 ± 0.57

9 ± 2.64

NA

15

13

Oxygen stress

10.66 ± 0.57

19 ± 3.46

12 ± 1

38

38

Phosphate limitation

1 ± 0

1.66 ± 0.57

NA

7

7

Sulphur

     

Sulfate transfer

1 ± 0

7.66 ± 2.3

1 ± 0

14

11

Sulfite reductase

6 ± 0

6.66 ± 0.57

5 ± 0

12

11

  1. Note The meaning of the codes is the same with those in Fig. 2. The signal counts of sponge DNA datasets (SA, SD, and SC) are the same with the cDNA datasets, as only the spots with both DNA and cDNA signals are considered to be positive. For sponge datasets, values are shown as mean ± SD (n = 3). Shannon indices based on all positive signals are shown in brackets *P < 0.05, ** P < 0.01
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Environmental Microbiome

ISSN: 2524-6372